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A conda-smithy repository for nghttp2.

Shell 1 13 Updated Nov 6, 2024

package compiler and linker metadata toolkit

C 507 113 Updated Mar 8, 2025

PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

Python 94 14 Updated Mar 7, 2025
Python 120 28 Updated Jan 24, 2025

Library extending Jupyter notebooks to integrate with Apache TinkerPop, openCypher, and RDF SPARQL.

Jupyter Notebook 755 171 Updated Feb 18, 2025

Nextflow pipeline to re-process all public single-cell RNA-seq data

Jupyter Notebook 10 1 Updated Mar 5, 2025

Genome modeling and design across all domains of life

Jupyter Notebook 2,438 236 Updated Mar 6, 2025

Arc Virtual Cell Atlas

Jupyter Notebook 211 18 Updated Mar 5, 2025

Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks

Python 7 Updated Nov 5, 2024

A toolchain for web projects, aimed to provide functionalities to maintain them. Biome offers formatter and linter, usable via CLI and LSP.

Rust 17,496 542 Updated Mar 8, 2025

R formatter and language server

Rust 183 9 Updated Mar 6, 2025

TIFF decoding library from https://gitlab.com/libtiff/libtiff

C 25 19 Updated Feb 26, 2025

DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images

Jupyter Notebook 12 1 Updated Feb 18, 2025
Python 24 5 Updated Apr 8, 2024

Container for Spatial Experiments

Python 2 Updated Mar 3, 2025
Jupyter Notebook 76 8 Updated Feb 13, 2025

A conda-smithy repository for direnv.

1 1 Updated Nov 5, 2024

a little bit of basilisk with owlready2

R 1 1 Updated Mar 13, 2024

This is the latest version of the internal repository from Pebble Technology providing the software to run on Pebble watches. Proprietary source code has been removed from this repository and it wi…

C 4,484 295 Updated Feb 25, 2025

Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

Python 7 1 Updated Mar 6, 2025

public production version of sequin to share with the public

HTML 11 4 Updated Jan 6, 2025

Mixture of Gaussian Processes Model for Sparse Longitudinal Data

Jupyter Notebook 37 5 Updated Dec 6, 2022
Jupyter Notebook 23 2 Updated Jan 7, 2025

MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions based on perturbation encoding.

Python 8 2 Updated Mar 4, 2025

data for msigdbr

R 1 Updated Feb 7, 2025

🐪 The Perl programming language

Perl 2,051 566 Updated Mar 7, 2025

Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

Jupyter Notebook 23 5 Updated Dec 17, 2024

quickly filter fastq files by matching sequences to a set of regex patterns

HTML 46 Updated Mar 9, 2025

HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

Python 243 21 Updated Feb 27, 2025

A conda-smithy repository for rclone.

2 3 Updated Feb 14, 2025
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