The package provides an R interface for the Python Congas package, which implements multiple statistical models to genotype Copy Number Alterations from single-cell RNA sequencing.
The package implements S3 objects to visualize the data, create and visualise model fits.
Rcongas is part of the evoverse set of R
packages to implement Cancer
Evolution analyses.
If you use Rcongas, please cite:
- Milite, Salvatore, et al. "A Bayesian method to cluster single-cell RNA sequencing data using Copy Number Alterations." Bioinformatics (2022).
You can install the released version of Rcongas from
GitHub with:
# install.packages("devtools")
devtools::install_github("militeee/Rcongas")Salvatore Milite, MSc, and Giulio Caravagna, PhD. University of Trieste, Trieste, Italy.
