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1. neherlab/pangraph neherlab/pangraph Public

   A bioinformatic toolkit to align genome assemblies into pangenome graphs

   Julia 90 7

2. evo-genome-analysis evo-genome-analysis Public

   workflow for the genomic analysis of evolution experiments

   Python 1

3. pypangraph pypangraph Public

   Python package to manipulate pangenome graphs generated by PanGraph

   Python 5

4. genome-assembly genome-assembly Public

   nextflow pipeline for parallel assembly of genomes using trycycler

   Nextflow 2

5. nanopore-basecalling nanopore-basecalling Public

   Nextflow pipeline to perform live basecalling of nanopore reads on cpu/gpu on a cluster using SLURM.

   Python 1 1

6. ecoliST131-structural-evo ecoliST131-structural-evo Public

   snakemake pipeline for the analysis of structural genomic evolution of E. coli ST131

   Python 1