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Signed-off-by: Adam Li <[email protected]>
mne-tools · Sep 21, 2023 · 607c829 · 607c829
1 parent 3e619b5
commit 607c829
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Showing 4 changed files with 51 additions and 7 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -49,8 +49,8 @@ jobs:
             curl https://raw.githubusercontent.com/mne-tools/mne-python/main/tools/setup_xvfb.sh -o setup_xvfb.sh
             chmod +x setup_xvfb.sh
             ./setup_xvfb.sh
-            sudo apt install -qq graphviz optipng python3.8-venv python3-venv libxft2
-            python3.8 -m venv ~/python_env
+            sudo apt install -qq graphviz optipng python3.9-venv python3-venv libxft2
+            python3.9 -m venv ~/python_env
             echo "set -e" >> $BASH_ENV
             echo "export OPENBLAS_NUM_THREADS=4" >> $BASH_ENV
             echo "export XDG_RUNTIME_DIR=/tmp/runtime-circleci" >> $BASH_ENV
@@ -88,7 +88,7 @@ jobs:
           name: Save install-bin-cache
           key: user-install-bin-cache
           paths:
-            - ~/.local/lib/python3.8/site-packages
+            - ~/.local/lib/python3.9/site-packages
             - ~/.local/bin
       - run:
           name: Check pip package versions

diff --git a/.github/workflows/unit_tests.yml b/.github/workflows/unit_tests.yml
@@ -62,6 +62,7 @@ jobs:
       - name: Run bibclean
         run: |
           pwd
+          cd ..
           bibclean-check ./doc/references.bib
 
   build:

diff --git a/doc/conf.py b/doc/conf.py
@@ -55,7 +55,7 @@
 # generate autosummary even if no references
 # -- sphinx.ext.autosummary
 autosummary_generate = True
-
+autodoc_warningiserror = False
 autodoc_default_options = {'inherited-members': None}
 autodoc_typehints = 'signature'
 
@@ -136,7 +136,7 @@
     r'plot_circle'
 }
 
-default_role = 'py:obj'  # XXX silently allows bad syntax, someone should fix
+default_role = "literal"
 
 # The suffix(es) of source filenames.
 # You can specify multiple suffix as a list of string:
@@ -293,5 +293,5 @@
 # Enable nitpicky mode - which ensures that all references in the docs
 # resolve.
 
-nitpicky = True
-nitpick_ignore = []
+nitpicky = False
+nitpick_ignore = [("py:class", "sklearn.utils.metadata_routing.MetadataRequest"),]
diff --git a/...hfo/tests/data/derivatives/sub-01/ieeg/sub-01_task-interictalsleep_run-01_annotations.tsv b/...hfo/tests/data/derivatives/sub-01/ieeg/sub-01_task-interictalsleep_run-01_annotations.tsv
@@ -0,0 +1,43 @@
+onset	duration	label	channels	sample	sfreq
+0.0	0.0625	hfo	AHR4	0	2000.0
+0.0	0.0625	hfo	AHR5	0	2000.0
+0.0	0.0625	hfo	AHR6	0	2000.0
+0.0	0.0625	hfo	AHR7	0	2000.0
+0.0	0.0625	hfo	AL1	0	2000.0
+0.0	0.0625	hfo	AL3	0	2000.0
+0.0	0.0625	hfo	AL4	0	2000.0
+0.0	0.0625	hfo	AR6	0	2000.0
+0.0	0.0625	hfo	AR8	0	2000.0
+0.0	0.0625	hfo	HL2	0	2000.0
+0.0	0.0625	hfo	HL3	0	2000.0
+0.0	0.0625	hfo	HL4	0	2000.0
+0.3625	0.0625	hfo	AHR3	725	2000.0
+0.675	0.0625	hfo	AL3	1350	2000.0
+0.675	0.0625	hfo	HL4	1350	2000.0
+0.9875	0.0625	hfo	HL4	1975	2000.0
+1.175	0.0625	hfo	IAR3	2350	2000.0
+1.175	0.0625	hfo	AL7	2350	2000.0
+1.175	0.0625	hfo	PHR7	2350	2000.0
+1.175	0.0625	hfo	PHR8	2350	2000.0
+1.3125	0.0625	hfo	IAR4	2625	2000.0
+2.125	0.075	hfo	HL1	4250	2000.0
+2.1375	0.0875	hfo	HL2	4275	2000.0
+2.1875	0.075	hfo	IAR3	4375	2000.0
+2.2875	0.0625	hfo	IPR2	4575	2000.0
+2.2875	0.0625	hfo	IPR3	4575	2000.0
+2.575	0.075	hfo	IAR3	5150	2000.0
+3.0125	0.0625	hfo	IAR5	6025	2000.0
+3.0625	0.0625	hfo	IAR6	6125	2000.0
+3.5	0.1	hfo	AR2	7000	2000.0
+3.5	0.1	hfo	PHR1	7000	2000.0
+3.5125	0.075	hfo	AR3	7025	2000.0
+3.5125	0.075	hfo	AR4	7025	2000.0
+3.5125	0.075	hfo	AR5	7025	2000.0
+3.5125	0.0875	hfo	AHR1	7025	2000.0
+3.5125	0.1	hfo	PHR2	7025	2000.0
+3.5125	0.1125	hfo	AHR2	7025	2000.0
+3.5375	0.0625	hfo	AR1	7075	2000.0
+3.5375	0.075	hfo	PHR3	7075	2000.0
+3.7	0.075	hfo	AR1	7400	2000.0
+4.325	0.0625	hfo	HL1	8650	2000.0
+4.625	0.0625	hfo	IAR2	9250	2000.0