[pre-commit.ci] pre-commit autoupdate (#321)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.4
+    rev: v0.8.6
     hooks:
       - id: ruff
       - id: ruff-format

recipes/mne-python/construct.yaml

@@ -101,7 +101,7 @@ specs:
   - tensorpac =0.6.5
   - emd =0.7.0
   - neurodsp =2.2.0
-  - bycycle =1.1.0
+  # - bycycle =1.1.0  # TODO: broken with latest SciPy
   - fooof =1.0.0
   # Microstates
   - mne-microstates =0.3.0
@@ -134,7 +134,7 @@ specs:
   - imageio-ffmpeg =0.5.1
   - pandas =2.2.3
   - polars =1.17.1
-  - scipy =1.14.1
+  - scipy =1.15.0
   - openblas =0.3.28
   - libblas =3.9.0=*openblas
   - jupyter =1.1.1
@@ -155,7 +155,7 @@ specs:
   # Statistics
   - pingouin =0.5.5
   # NeuroSpin needs the following
-  - questionary =2.0.1
+  - questionary =2.1.0
   - pqdm =0.2.0
   - astropy =7.0.0
   # Viz
@@ -165,29 +165,29 @@ specs:
   - tornado =6.4.2
   - pyside6 =6.7.3=*_1  # allow_outdated, vtk needs rebuild against 6.8.0 https://github.com/conda-forge/vtk-feedstock/pull/357
   - qt6-main =6.7.3  # allow_outdated
-  - ipympl =0.9.5
+  - ipympl =0.9.6
   - qtpy =2.4.2
   - seaborn =0.13.2
   - plotly =5.24.1
   - vtk =9.3.1=qt*
   - ipywidgets =8.1.5
   - pyvista =0.44.2
   - pyvistaqt =0.11.1
-  - trame =3.7.1
+  - trame =3.7.6
   - trame-vtk =2.8.12
-  - trame-vuetify =2.7.2
+  - trame-vuetify =2.8.0
   - termcolor =2.5.0
   - defusedxml =0.7.1
   # Development
-  - gh =2.64.0
+  - gh =2.65.0
   - setuptools_scm =8.1.0
   - pytest =8.3.4
   - pytest-cov =6.0.0
   - pytest-qt =4.4.0
   - pytest-timeout =2.3.1
   - pre-commit =4.0.1
-  - ruff =0.8.4
-  - uv =0.5.11
+  - ruff =0.8.6
+  - uv =0.5.15
   - check-manifest =0.50
   - codespell =2.3.0
   - py-spy =0.4.0
@@ -196,7 +196,7 @@ specs:
   - twine =6.0.1
   - hatchling =1.27.0
   - hatch-vcs =0.4.0
-  - mypy =1.14.0
+  - mypy =1.14.1
   - towncrier =23.11.0  # allow_outdated, 24.7.1 doesn't work with sphinxcontrib-towncrier
   - vulture =2.14
   # Doc building

tests/test_imports.py

@@ -47,7 +47,8 @@ def check_min_version(package, min_version):
 import tensorpac
 import emd
 import neurodsp
-import bycycle
+
+# import bycycle
 import fooof
 import openneuro
 import sleepecg

tools/check_installation.sh

@@ -75,12 +75,12 @@ echo "Got OWNER=$OWNER, should be $(whoami)"
 test "$OWNER" == "$(whoami)"
 echo "::endgroup::"
 
-echo "::group:Checking whether Qt is working"
+echo "::group::Checking whether Qt is working"
 # LD_DEBUG=libs
 python -c "from qtpy.QtWidgets import QApplication, QWidget; app = QApplication([])"
 echo "::endgroup::"
 
-echo "::group:Checking the deployed environment variables were set correctly upon environment activation"
+echo "::group::Checking the deployed environment variables were set correctly upon environment activation"
 conda env config vars list
 if [[ "$MNE_MACHINE" == "macOS" && "$MACOS_ARCH" == "Intel" ]]; then
     python -c "import os; x = os.getenv('CONDA_SUBDIR'); assert x == 'osx-64', f'CONDA_SUBDIR ({repr(x)}) != osx-64'" || exit 1
@@ -96,13 +96,13 @@ echo "::group::mne sys_info"
 mne sys_info
 echo "::endgroup::"
 
-echo "::group:Trying to import MNE and all additional packages included in the installer"
+echo "::group::Trying to import MNE and all additional packages included in the installer"
 python -u tests/test_imports.py
 python -u tests/test_gui.py
 python -u tests/test_notebook.py
 python -u tests/test_json_versions.py
 echo "::endgroup::"
 
-echo "::group:Checking that all packages are installed that MNE-Python devs would need"
+echo "::group::Checking that all packages are installed that MNE-Python devs would need"
 python -u tests/test_dev_installed.py
 echo "::endgroup::"