[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.6
+    rev: v0.9.1
     hooks:
       - id: ruff
       - id: ruff-format

recipes/mne-python/construct.yaml

@@ -99,7 +99,7 @@ specs:
   # Time-frequency analysis
   - pactools =0.3.1
   - tensorpac =0.6.5
-  - emd =0.7.0
+  - emd =0.8.0
   - neurodsp =2.2.0
   # - bycycle =1.1.0  # TODO: broken with latest SciPy
   - fooof =1.0.0
@@ -109,8 +109,8 @@ specs:
   # OpenNeuro.org data access
   - openneuro-py =2024.2.0
   # sleep staging
-  - sleepecg =0.5.8
-  - yasa =0.6.5
+  # - sleepecg =0.5.8  # TODO: not NumPy 2.0 compatible yet because of wfdb
+  # - yasa =0.6.5  # TODO: not NumPy 2.0 compatible yet because of sleepecg
   # various biological signals (ECG, EOG, EMG, …)
   - neurokit2 =0.2.10
   - mnelab =0.9.2
@@ -121,8 +121,8 @@ specs:
   - pybv =0.7.6
   - eeglabio =0.0.3
   - mffpy =0.10.0
-  - openmeeg =2.5.14
-  - python-neo =0.13.4
+  - openmeeg =2.5.15
+  # - python-neo =0.13.4  # TODO: Not NumPy 2.0 compatible yet
   - nitime =0.11
   - snirf =0.8.0
   # <<< END RELATED SOFTWARE LIST >>>
@@ -134,7 +134,7 @@ specs:
   - imageio-ffmpeg =0.5.1
   - pandas =2.2.3
   - polars =1.17.1
-  - scipy =1.15.0
+  - scipy =1.15.1
   - openblas =0.3.28
   - libblas =3.9.0=*openblas
   - jupyter =1.1.1
@@ -149,7 +149,7 @@ specs:
   - numba =0.60.0
   - cython =3.0.11
   # I/O
-  - pyxdf =1.16.8
+  - pyxdf =1.17.0
   - openpyxl =3.1.5
   - xlrd =2.0.1
   # Statistics
@@ -174,7 +174,7 @@ specs:
   - pyvista =0.44.2
   - pyvistaqt =0.11.1
   - trame =3.7.6
-  - trame-vtk =2.8.12
+  - trame-vtk =2.8.14
   - trame-vuetify =2.8.0
   - termcolor =2.5.0
   - defusedxml =0.7.1
@@ -186,8 +186,8 @@ specs:
   - pytest-qt =4.4.0
   - pytest-timeout =2.3.1
   - pre-commit =4.0.1
-  - ruff =0.8.6
-  - uv =0.5.15
+  - ruff =0.9.1
+  - uv =0.5.18
   - check-manifest =0.50
   - codespell =2.3.0
   - py-spy =0.4.0

tests/test_dev_installed.py

@@ -25,6 +25,11 @@
     dep
     for dep in deps.split()
     if not re.match("mne-[0-9]+", dep)
+    # TODO because we don't install neo
+    and not dep.startswith("neo-")
+    and not dep.startswith("numpy-")
+    and not dep.startswith("pyxdf-")
+    and not dep.startswith("quantities-")
     # Qt-related stuff
     and not dep.startswith("sip-")
     # and not on conda-forge yet

tests/test_imports.py

@@ -5,9 +5,9 @@ def check_min_version(package, min_version):
     """Check a minimum version."""
     from packaging.version import parse
 
-    assert parse(package.__version__) >= parse(
-        min_version
-    ), f"{package}: got {package.__version__} wanted {min_version}"
+    assert parse(package.__version__) >= parse(min_version), (
+        f"{package}: got {package.__version__} wanted {min_version}"
+    )
 
 
 import mne
@@ -48,11 +48,13 @@ def check_min_version(package, min_version):
 import emd
 import neurodsp
 
-# import bycycle
+# import bycycle  # TODO
 import fooof
 import openneuro
-import sleepecg
-import yasa
+
+# import sleepecg  # TODO
+# import yasa  # TODO
+# import neo  # TODO
 import neurokit2
 import questionary
 import matplotlib.pyplot