bug fix: update packages from conda-forge

morinlab · Mar 15, 2024 · d2a2d87 · d2a2d87
1 parent eae3bc1
commit d2a2d87
Showing 1 changed file with 82 additions and 80 deletions.
diff --git a/envs/r.yaml b/envs/r.yaml
@@ -5,119 +5,121 @@ channels:
 dependencies:
   - _libgcc_mutex=0.1
   - _openmp_mutex=4.5
-  - _r-mutex=1.0.0
-  - binutils_impl_linux-64=2.38
-  - bwidget=1.9.16
+  - _r-mutex=1.0.1
+  - _sysroot_linux-64_curr_repodata_hack=3
+  - binutils_impl_linux-64=2.40
+  - bwidget=1.9.14
   - bzip2=1.0.8
-  - c-ares=1.19.1
-  - ca-certificates=2023.12.12
+  - c-ares=1.27.0
+  - ca-certificates=2024.2.2
   - cairo=1.18.0
   - curl=8.5.0
-  - expat=2.5.0
+  - expat=2.6.2
   - font-ttf-dejavu-sans-mono=2.37
-  - font-ttf-inconsolata=2.001
-  - font-ttf-source-code-pro=2.030
+  - font-ttf-inconsolata=3.000
+  - font-ttf-source-code-pro=2.038
   - font-ttf-ubuntu=0.83
   - fontconfig=2.14.2
   - fonts-anaconda=1
   - fonts-conda-ecosystem=1
   - fonts-conda-forge=1
   - freetype=2.12.1
   - fribidi=1.0.10
-  - gcc_impl_linux-64=11.2.0
-  - gettext=0.21.0
-  - gfortran_impl_linux-64=11.2.0
-  - graphite2=1.3.14
-  - gxx_impl_linux-64=11.2.0
+  - gcc_impl_linux-64=13.2.0
+  - gettext=0.21.1
+  - gfortran_impl_linux-64=13.2.0
+  - graphite2=1.3.13
+  - gxx_impl_linux-64=13.2.0
   - harfbuzz=8.3.0
   - icu=73.2
-  - kernel-headers_linux-64=2.6.32
+  - kernel-headers_linux-64=4.18.0
   - keyutils=1.6.1
-  - krb5=1.20.1
-  - ld_impl_linux-64=2.38
+  - krb5=1.21.2
+  - ld_impl_linux-64=2.40
   - lerc=4.0.0
   - libblas=3.9.0
   - libcurl=8.5.0
   - libdeflate=1.19
-  - libedit=3.1.20230828
+  - libedit=3.1.20191231
   - libev=4.33
-  - libexpat=2.5.0
-  - libffi=3.4.4
-  - libgcc-devel_linux-64=11.2.0
+  - libexpat=2.6.2
+  - libffi=3.4.2
+  - libgcc-devel_linux-64=13.2.0
   - libgcc-ng=13.2.0
-  - libgfortran-ng=11.2.0
-  - libgfortran5=11.2.0
-  - libgit2=1.6.4
-  - libglib=2.78.4
+  - libgfortran-ng=13.2.0
+  - libgfortran5=13.2.0
+  - libgit2=1.7.2
+  - libglib=2.80.0
   - libgomp=13.2.0
   - libiconv=1.17
   - libjpeg-turbo=3.0.0
   - liblapack=3.9.0
-  - libnghttp2=1.57.0
-  - libopenblas=0.3.21
+  - libnghttp2=1.58.0
+  - libopenblas=0.3.26
   - libpng=1.6.43
-  - libssh2=1.10.0
-  - libstdcxx-devel_linux-64=11.2.0
+  - libsanitizer=13.2.0
+  - libssh2=1.11.0
+  - libstdcxx-devel_linux-64=13.2.0
   - libstdcxx-ng=13.2.0
   - libtiff=4.6.0
   - libuuid=2.38.1
   - libwebp-base=1.3.2
   - libxcb=1.15
-  - libxml2=2.10.4
+  - libxml2=2.12.5
   - libzlib=1.2.13
   - lz4-c=1.9.4
-  - make=4.2.1
+  - make=4.3
   - ncurses=6.4
-  - openssl=3.0.13
-  - pandoc=2.12
-  - pango=1.52.0
-  - pcre2=10.42
+  - openssl=3.2.1
+  - pandoc=3.1.12.2
+  - pango=1.52.1
+  - pcre2=10.43
   - pixman=0.43.2
   - pthread-stubs=0.4
   - r-askpass=1.2.0
   - r-assertthat=0.2.1
-  - r-base=4.3.3
+  - r-base=4.2.3
   - r-base64enc=0.1_3
   - r-biocmanager=1.30.22
-  - r-brew=1.0_8
-  - r-brio=1.1.3
-  - r-bslib=0.5.1
+  - r-brew=1.0_10
+  - r-brio=1.1.4
+  - r-bslib=0.6.1
   - r-cachem=1.0.8
-  - r-callr=3.7.3
-  - r-cli=3.6.1
+  - r-callr=3.7.5
+  - r-cli=3.6.2
   - r-clipr=0.8.0
-  - r-commonmark=1.9.0
-  - r-cpp11=0.4.6
+  - r-commonmark=1.9.1
+  - r-cpp11=0.4.7
   - r-crayon=1.5.2
   - r-credentials=2.0.1
   - r-curl=5.1.0
-  - r-desc=1.4.2
+  - r-desc=1.4.3
   - r-devtools=2.4.5
   - r-diffobj=0.3.5
-  - r-digest=0.6.33
+  - r-digest=0.6.35
   - r-downlit=0.4.3
   - r-ellipsis=0.3.2
-  - r-evaluate=0.22
-  - r-fansi=1.0.5
+  - r-evaluate=0.23
+  - r-fansi=1.0.6
   - r-fastmap=1.1.1
   - r-fontawesome=0.5.2
   - r-fs=1.6.3
-  - r-gert=2.0.0
+  - r-gert=2.0.1
   - r-gh=1.4.0
   - r-gitcreds=0.1.2
-  - r-glue=1.6.2
+  - r-glue=1.7.0
   - r-highr=0.10
-  - r-htmltools=0.5.6.1
-  - r-htmlwidgets=1.6.2
-  - r-httpuv=1.6.11
+  - r-htmltools=0.5.7
+  - r-htmlwidgets=1.6.4
+  - r-httpuv=1.6.14
   - r-httr=1.4.7
-  - r-httr2=0.2.3
+  - r-httr2=1.0.0
   - r-ini=0.3.1
   - r-jquerylib=0.1.4
-  - r-jsonlite=1.8.7
-  - r-knitr=1.44
-  - r-later=1.3.1
-  - r-lifecycle=1.0.3
+  - r-jsonlite=1.8.8
+  - r-knitr=1.45
+  - r-later=1.3.2
+  - r-lifecycle=1.0.4
   - r-magrittr=2.0.3
   - r-memoise=2.0.1
   - r-mime=0.12
@@ -127,55 +129,55 @@ dependencies:
   - r-pkgbuild=1.4.2
   - r-pkgconfig=2.0.3
   - r-pkgdown=2.0.7
-  - r-pkgload=1.3.3
+  - r-pkgload=1.3.4
   - r-praise=1.0.0
   - r-prettyunits=1.2.0
-  - r-processx=3.8.2
+  - r-processx=3.8.3
   - r-profvis=0.3.8
   - r-promises=1.2.1
-  - r-ps=1.7.5
+  - r-ps=1.7.6
   - r-purrr=1.0.2
   - r-r6=2.5.1
-  - r-ragg=1.2.6
+  - r-ragg=1.3.0
   - r-rappdirs=0.3.3
   - r-rcmdcheck=1.4.0
-  - r-rcpp=1.0.11
+  - r-rcpp=1.0.12
   - r-rematch2=2.1.2
   - r-remotes=2.4.2.1
-  - r-rlang=1.1.1
+  - r-rlang=1.1.3
   - r-rmarkdown=2.25
-  - r-roxygen2=7.2.3
-  - r-rprojroot=2.0.3
+  - r-roxygen2=7.3.1
+  - r-rprojroot=2.0.4
   - r-rstudioapi=0.15.0
   - r-rversions=2.1.2
-  - r-sass=0.4.7
+  - r-sass=0.4.8
   - r-sessioninfo=1.2.2
-  - r-shiny=1.7.5.1
+  - r-shiny=1.8.0
   - r-sourcetools=0.1.7_1
-  - r-stringi=1.7.12
-  - r-stringr=1.5.0
+  - r-stringi=1.8.3
+  - r-stringr=1.5.1
   - r-sys=3.4.2
   - r-systemfonts=1.0.5
-  - r-testthat=3.2.0
+  - r-testthat=3.2.1
   - r-textshaping=0.3.7
   - r-tibble=3.2.1
-  - r-tinytex=0.48
+  - r-tinytex=0.49
   - r-urlchecker=1.0.1
-  - r-usethis=2.2.2
+  - r-usethis=2.2.3
   - r-utf8=1.2.4
-  - r-vctrs=0.6.4
-  - r-waldo=0.5.1
+  - r-vctrs=0.6.5
+  - r-waldo=0.5.2
   - r-whisker=0.4.1
-  - r-withr=2.5.1
-  - r-xfun=0.40
-  - r-xml2=1.3.5
+  - r-withr=3.0.0
+  - r-xfun=0.42
+  - r-xml2=1.3.6
   - r-xopen=1.0.0
   - r-xtable=1.8_4
-  - r-yaml=2.3.7
-  - r-zip=2.3.0
+  - r-yaml=2.3.8
+  - r-zip=2.3.1
   - readline=8.2
   - sed=4.8
-  - sysroot_linux-64=2.12
+  - sysroot_linux-64=2.28
   - tk=8.6.13
   - tktable=2.10
   - xorg-kbproto=1.0.7
@@ -190,6 +192,6 @@ dependencies:
   - xorg-renderproto=0.11.1
   - xorg-xextproto=7.3.0
   - xorg-xproto=7.0.31
-  - xz=5.4.6
+  - xz=5.2.6
   - zlib=1.2.13
   - zstd=1.5.5