bug fixes for ucsc

morinlab · Apr 30, 2024 · 9dca956 · 9dca956
1 parent a689e7a
commit 9dca956
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Showing 8 changed files with 26 additions and 17 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -26,7 +26,6 @@ export(sv_to_bedpe_file)
 export(sv_to_custom_track)
 export(tidy_lymphgen)
 export(view_mutation_igv)
-import(GAMBLR.data)
 import(GAMBLR.helpers)
 import(GenomicRanges, except = c("start", "end", "merge", "shift", "union", "intersect", "setdiff", "reduce", "trim"))
 import(S4Vectors, except = c("merge", "second", "first", "union", "intersect", "setdiff", "setequal", "rename", "expand", "head", "tail", "end", "start"))

diff --git a/R/build_browser_hub.R b/R/build_browser_hub.R
@@ -71,7 +71,7 @@
 #'
 #' @return Nothing.
 #' 
-#' @import dplyr GAMBLR.helpers
+#' @import dplyr
 #' @export
 #'
 #' @examples

diff --git a/R/liftover.R b/R/liftover.R
@@ -25,7 +25,7 @@
 #' @rawNamespace import(S4Vectors, except = c("merge", "second", "first", "union", "intersect", "setdiff", "setequal", "rename", "expand", "head", "tail", "end", "start"))
 #' @rawNamespace import(GenomicRanges, except = c("start", "end", "merge", "shift", "union", "intersect", "setdiff", "reduce", "trim"))
 #' @rawNamespace import(rtracklayer, except = c("start", "end"))
-#' @import dplyr tidyr readr GAMBLR.data
+#' @import dplyr tidyr readr
 #' @export
 #'
 #' @examples

diff --git a/man/annotate_sv.Rd b/man/annotate_sv.Rd
diff --git a/man/build_browser_hub.Rd b/man/build_browser_hub.Rd
diff --git a/man/gene_to_region.Rd b/man/gene_to_region.Rd
diff --git a/man/make_igv_snapshot.Rd b/man/make_igv_snapshot.Rd
diff --git a/man/view_mutation_igv.Rd b/man/view_mutation_igv.Rd