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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,75 @@ | ||
| <!DOCTYPE html> | ||
| <html> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| </head> | ||
| <body> | ||
|
|
||
| <script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> | ||
|
|
||
| <div id=aaa style="margin:10px"></div> | ||
|
|
||
| <script> | ||
| runproteinpaint({ | ||
| host:'https://proteinpaint.stjude.org', | ||
| holder:document.getElementById('aaa'), | ||
| genome:'hg19', | ||
| block:1, | ||
| positionbygene:'ABI3BP', | ||
| tracks:[ | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genome.10.bw", | ||
| name:"DLBCL mutation density", | ||
| height:50, | ||
| pcolor: "#479450" | ||
| }, | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genome.10.bw", | ||
| name:"BL mutation density", | ||
| height:50, | ||
| pcolor: "#926CAD" | ||
| }, | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genome.10.bw", | ||
| name:"FL mutation density", | ||
| height:50, | ||
| pcolor: "#EA8368" | ||
| }, | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genome.10.bw", | ||
| name:"MCL mutation density", | ||
| height:50, | ||
| pcolor: "#40E0D0" | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL DLBCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL FL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL BL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL MCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genomes.22-04-24.vcf.gz' | ||
| } | ||
| ], | ||
| nativetracks: 'RefGene', | ||
| noheader:true, | ||
| nobox:true | ||
| }) | ||
| </script> | ||
| </body> | ||
| </html> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,47 @@ | ||
| <!DOCTYPE html> | ||
| <html> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| </head> | ||
| <body> | ||
|
|
||
| <script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> | ||
|
|
||
| <div id=aaa style="margin:10px"></div> | ||
|
|
||
| <script> | ||
| runproteinpaint({ | ||
| host:'https://proteinpaint.stjude.org', | ||
| holder:document.getElementById('aaa'), | ||
| genome:'hg38', | ||
| block:1, | ||
| positionbygene:'ABI3BP', | ||
| tracks:[ | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL DLBCL', | ||
| url: "https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.hg38.vep.sort.vcf.gz" | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL FL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genomes.hg38.vep.sort.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL BL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genomes.hg38.vep.sort.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL MCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genomes.hg38.vep.sort.vcf.gz' | ||
| } | ||
| ], | ||
| nativetracks: 'RefGene', | ||
| noheader:true, | ||
| nobox:true | ||
| }) | ||
| </script> | ||
| </body> | ||
| </html> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| <!DOCTYPE html> | ||
| <html> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| </head> | ||
| <body> | ||
|
|
||
| <script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> | ||
|
|
||
| <div id=aaa style="margin:10px"></div> | ||
|
|
||
| <script> | ||
| runproteinpaint({ | ||
| host:'https://proteinpaint.stjude.org', | ||
| holder:document.getElementById('aaa'), | ||
| gene: 'ABI3BP', | ||
| genome:'hg19', | ||
| block:0, | ||
| positionbygene:'ABI3BP', | ||
| tracks:[ | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL DLBCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL FL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL BL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL MCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genomes.22-04-24.vcf.gz' | ||
| } | ||
| ], | ||
| nativetracks: 'RefGene', | ||
| noheader:true, | ||
| nobox:true, | ||
| hlaachange: 'p.Tyr646Phe,p.Tyr646Ser,Tyr646Phe,Y646H' | ||
| }) | ||
| </script> | ||
| </body> | ||
| </html> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| <!DOCTYPE html> | ||
| <html> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| </head> | ||
| <body> | ||
|
|
||
| <script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> | ||
|
|
||
| <div id=aaa style="margin:10px"></div> | ||
|
|
||
| <script> | ||
| runproteinpaint({ | ||
| host:'https://proteinpaint.stjude.org', | ||
| holder:document.getElementById('aaa'), | ||
| gene: 'ABI3BP', | ||
| genome:'hg38', | ||
| block:0, | ||
| positionbygene:'ABI3BP', | ||
| tracks:[ | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL DLBCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.hg38.coding.2.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL FL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genomes.hg38.coding.2.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL BL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genomes.hg38.coding.2.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL MCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genomes.hg38.coding.2.vcf.gz' | ||
| } | ||
| ], | ||
| nativetracks: 'RefGene', | ||
| noheader:true, | ||
| nobox:true, | ||
| hlaachange: 'p.Tyr646Phe,p.Tyr646Ser,Tyr646Phe,Y646H' | ||
| }) | ||
| </script> | ||
| </body> | ||
| </html> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,75 @@ | ||
| <!DOCTYPE html> | ||
| <html> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| </head> | ||
| <body> | ||
|
|
||
| <script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> | ||
|
|
||
| <div id=aaa style="margin:10px"></div> | ||
|
|
||
| <script> | ||
| runproteinpaint({ | ||
| host:'https://proteinpaint.stjude.org', | ||
| holder:document.getElementById('aaa'), | ||
| genome:'hg19', | ||
| block:1, | ||
| positionbygene:'ABL2', | ||
| tracks:[ | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genome.10.bw", | ||
| name:"DLBCL mutation density", | ||
| height:50, | ||
| pcolor: "#479450" | ||
| }, | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genome.10.bw", | ||
| name:"BL mutation density", | ||
| height:50, | ||
| pcolor: "#926CAD" | ||
| }, | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genome.10.bw", | ||
| name:"FL mutation density", | ||
| height:50, | ||
| pcolor: "#EA8368" | ||
| }, | ||
| { | ||
| type:"bigwig", | ||
| url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genome.10.bw", | ||
| name:"MCL mutation density", | ||
| height:50, | ||
| pcolor: "#40E0D0" | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL DLBCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL FL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL BL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL MCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genomes.22-04-24.vcf.gz' | ||
| } | ||
| ], | ||
| nativetracks: 'RefGene', | ||
| noheader:true, | ||
| nobox:true | ||
| }) | ||
| </script> | ||
| </body> | ||
| </html> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,47 @@ | ||
| <!DOCTYPE html> | ||
| <html> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| </head> | ||
| <body> | ||
|
|
||
| <script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> | ||
|
|
||
| <div id=aaa style="margin:10px"></div> | ||
|
|
||
| <script> | ||
| runproteinpaint({ | ||
| host:'https://proteinpaint.stjude.org', | ||
| holder:document.getElementById('aaa'), | ||
| genome:'hg38', | ||
| block:1, | ||
| positionbygene:'ABL2', | ||
| tracks:[ | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL DLBCL', | ||
| url: "https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.hg38.vep.sort.vcf.gz" | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL FL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genomes.hg38.vep.sort.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL BL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genomes.hg38.vep.sort.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL MCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genomes.hg38.vep.sort.vcf.gz' | ||
| } | ||
| ], | ||
| nativetracks: 'RefGene', | ||
| noheader:true, | ||
| nobox:true | ||
| }) | ||
| </script> | ||
| </body> | ||
| </html> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,49 @@ | ||
| <!DOCTYPE html> | ||
| <html> | ||
| <head> | ||
| <meta charset="utf-8"> | ||
| </head> | ||
| <body> | ||
|
|
||
| <script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> | ||
|
|
||
| <div id=aaa style="margin:10px"></div> | ||
|
|
||
| <script> | ||
| runproteinpaint({ | ||
| host:'https://proteinpaint.stjude.org', | ||
| holder:document.getElementById('aaa'), | ||
| gene: 'ABL2', | ||
| genome:'hg19', | ||
| block:0, | ||
| positionbygene:'ABL2', | ||
| tracks:[ | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL DLBCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL FL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL BL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genomes.22-04-24.vcf.gz' | ||
| }, | ||
| { | ||
| type:'vcf', | ||
| name:'GAMBL MCL', | ||
| url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genomes.22-04-24.vcf.gz' | ||
| } | ||
| ], | ||
| nativetracks: 'RefGene', | ||
| noheader:true, | ||
| nobox:true, | ||
| hlaachange: 'p.Tyr646Phe,p.Tyr646Ser,Tyr646Phe,Y646H' | ||
| }) | ||
| </script> | ||
| </body> | ||
| </html> |
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