add files per study

resources/curated/individual_study_lists/DLBCL/albuquerqueEnhancingKnowledgeDiscovery2017a.tsv

@@ -0,0 +1,39 @@
+Gene
+KMT2D
+TP53
+CD79B
+GNA13
+TNFRSF14
+CREBBP
+CARD11
+MYD88
+HLA-B
+TET2
+CD70
+SETD1B
+SPEN
+HLA-A
+ACTB
+STAT6
+TMEM30A
+TNFAIP3
+UBR5
+MEF2B
+CD58
+NFKBIE
+BTK
+ARID1A
+CEP164
+DNMT3B
+ERAP2
+ETV6
+EZH2
+FAS
+UBE2A
+KLHL6
+EBF1
+ZFP36L1
+CIITA
+KMT2C
+ASXL3
+B2M

resources/curated/individual_study_lists/DLBCL/annotated_albuquerqueEnhancingKnowledgeDiscovery2017a.tsv

@@ -0,0 +1,39 @@
+Gene	citekey	Tier	QC	Novel
+KMT2D	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TP53	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+CD79B	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+GNA13	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TNFRSF14	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CREBBP	pasqualucciInactivatingMutationsAcetyltransferase2011a	1	NA	FALSE
+CARD11	lenzOncogenicCARD11Mutations2008	1	NA	FALSE
+MYD88	ngoOncogenicallyActiveMYD882011a	1	NA	FALSE
+HLA-B	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+TET2	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	TRUE
+CD70	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+SETD1B	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	TRUE
+SPEN	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	TRUE
+HLA-A	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+ACTB	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+STAT6	yildizActivatingSTAT6Mutations2015c	1	NA	FALSE
+TMEM30A	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TNFAIP3	compagnoMutationsMultipleGenes2009a	1	NA	FALSE
+UBR5	zhangGeneticHeterogeneityDiffuse2013	2	NA	FALSE
+MEF2B	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CD58	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+NFKBIE	morinGeneticLandscapesRelapsed2016	1	NA	FALSE
+BTK	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	TRUE
+ARID1A	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+CEP164	albuquerqueEnhancingKnowledgeDiscovery2017a	2	NA	TRUE
+DNMT3B	albuquerqueEnhancingKnowledgeDiscovery2017a	2	NA	TRUE
+ERAP2	albuquerqueEnhancingKnowledgeDiscovery2017a	2	NA	TRUE
+ETV6	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+EZH2	morinSomaticMutationsAltering2010a	1	NA	FALSE
+FAS	schollMutationsRegionFAS2007	1	NA	FALSE
+UBE2A	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+KLHL6	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+EBF1	bohleRoleEarlyBcell2013	1	NA	FALSE
+ZFP36L1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CIITA	morinFrequentMutationHistonemodifying2011	2	NA	FALSE
+KMT2C	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+ASXL3	albuquerqueEnhancingKnowledgeDiscovery2017a	2	NA	TRUE
+B2M	morinFrequentMutationHistonemodifying2011	1	NA	FALSE

resources/curated/individual_study_lists/DLBCL/annotated_arthurGenomewideDiscoverySomatic2018.tsv

@@ -0,0 +1,102 @@
+Gene	citekey	Tier	QC	Novel
+ADAMTS12	NA	NA	NA	NA
+ADPRHL1	NA	NA	NA	NA
+AICDA	arthurGenomewideDiscoverySomatic2018	2	NA	TRUE
+ARID1A	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+ARID5B	reddyGeneticFunctionalDrivers2017	2	PASS	FALSE
+ATM	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+B2M	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BATF	NA	NA	NA	NA
+BCL10	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BCL2	tanakaFrequentIncidenceSomatic1992	1	NA	FALSE
+BCL7A	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BIRC6	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+BTG2	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+C1orf186	NA	NA	NA	NA
+CARD11	lenzOncogenicCARD11Mutations2008	1	NA	FALSE
+CBWD7	NA	NA	NA	NA
+CCND1	NA	NA	NA	NA
+CCND3	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CD44	arthurGenomewideDiscoverySomatic2018	2	NA	TRUE
+CD58	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CD74	arthurGenomewideDiscoverySomatic2018	2	NA	TRUE
+CD79B	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CIITA	morinFrequentMutationHistonemodifying2011	2	NA	FALSE
+CREBBP	pasqualucciInactivatingMutationsAcetyltransferase2011a	1	NA	FALSE
+DDX3X	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+DNMT1	NA	NA	NA	NA
+DMD	NA	NA	NA	NA
+DSG4	morinMutationalStructuralAnalysis2013	2	PASS	FALSE
+EBF1	bohleRoleEarlyBcell2013	1	NA	FALSE
+EP300	pasqualucciInactivatingMutationsAcetyltransferase2011a	1	NA	FALSE
+EZH2	morinSomaticMutationsAltering2010a	1	NA	FALSE
+ETS1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+ETV6	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+EZH2	morinSomaticMutationsAltering2010a	1	NA	FALSE
+FAS	schollMutationsRegionFAS2007	1	NA	FALSE
+FBXO11	hubschmannMutationalMechanismsShaping2021b	1	NA	FALSE
+FOXO1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+GABRB3	NA	NA	NA	NA
+GRHPR	arthurGenomewideDiscoverySomatic2018	1	NA	TRUE
+GHDC	NA	NA	NA	NA
+GNA13	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+GNAI2	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+HIST1H1C	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+HIST1H1E	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+HVCN1	chapuyMolecularSubtypesDiffuse2018b	1	NA	FALSE
+ID3	schmitzBurkittLymphomaPathogenesis2012	2	NA	FALSE
+IGLL5	chapuyMolecularSubtypesDiffuse2018b	2	NA	FALSE
+IL4R	dunsCharacterizationDLBCLPMBL2021b	1	NA	FALSE
+IRF4	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+IRF8	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+KHDRBS2	NA	NA	NA	NA
+KLHL6	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+KMT2C	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+KMT2D	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+LPP	arthurGenomewideDiscoverySomatic2018	2	NA	TRUE
+MEF2B	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+MPEG1	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+MS4A1	rushtonGeneticEvolutionaryPatterns2020	1	NA	FALSE
+MYC	pasqualucciHypermutationMultipleProtooncogenes2001a	1	NA	FALSE
+MYD88	ngoOncogenicallyActiveMYD882011a	1	NA	FALSE
+NFKB1	NA	2	NA	NA
+NFKBIA	lakeMutationsNFKBIAEncoding2009	1	NA	FALSE
+NFKBIE	morinGeneticLandscapesRelapsed2016	1	NA	FALSE
+NFKBIZ	morinGeneticLandscapesRelapsed2016	1	NA	FALSE
+NOTCH1	pasqualucciAnalysisCodingGenome2011	1	NA	FALSE
+NR3C1	NA	NA	NA	NA
+P2RY8	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+PCBP1	NA	2	NA	NA
+PDS5B	morinMutationalStructuralAnalysis2013	2	PASS	FALSE
+PHF6	reddyGeneticFunctionalDrivers2017	3	FAIL	FALSE
+PIM1	pasqualucciHypermutationMultipleProtooncogenes2001a	1	NA	FALSE
+PIM2	arthurGenomewideDiscoverySomatic2018	1	NA	TRUE
+PLEKHA2	NA	NA	NA	NA
+POU2F2	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+PTPN1	NA	2	NA	NA
+RB1	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+RBM38	NA	NA	NA	NA
+RFX7	NA	1	NA	NA
+RHOA	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+S1PR2	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+SGK1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+SIN3A	chapuyMolecularSubtypesDiffuse2018b	1	NA	FALSE
+SMARCA4	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+SOCS1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+SPEN	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	FALSE
+ST8SIA1	NA	NA	NA	NA
+STAT6	yildizActivatingSTAT6Mutations2015c	1	NA	FALSE
+TBL1XR1	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+TBC1D4	arthurGenomewideDiscoverySomatic2018	2	NA	TRUE
+TCF3	NA	NA	NA	NA
+TFAP4	NA	NA	NA	NA
+TMEM30A	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TMSB4X	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	FALSE
+TNFAIP3	compagnoMutationsMultipleGenes2009a	1	NA	FALSE
+TNFRSF14	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TP53	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+UBR4	NA	NA	NA	NA
+USP7	NA	1	NA	NA
+ZC3H12A	chapuyMolecularSubtypesDiffuse2018b	1	NA	FALSE
+ZFP36L1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+ZCCHC7	arthurGenomewideDiscoverySomatic2018	2	NA	TRUE

resources/curated/individual_study_lists/DLBCL/annotated_chapuyMolecularSubtypesDiffuse2018b.tsv

@@ -0,0 +1,99 @@
+Gene	citekey	Tier	QC	Novel
+TP53	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+MYD88	ngoOncogenicallyActiveMYD882011a	1	NA	FALSE
+CREBBP	pasqualucciInactivatingMutationsAcetyltransferase2011a	1	NA	FALSE
+CD79B	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+HLA-B	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+CD70	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+FAS	schollMutationsRegionFAS2007	1	NA	FALSE
+KLHL6	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+PRDM1	pasqualucciInactivationPRDM1BLIMP12006a	1	NA	FALSE
+TBL1XR1	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+BTG1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BCL2	tanakaFrequentIncidenceSomatic1992	1	NA	FALSE
+CARD11	lenzOncogenicCARD11Mutations2008	1	NA	FALSE
+HLA-A	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+PIM1	pasqualucciHypermutationMultipleProtooncogenes2001a	1	NA	FALSE
+CCND3	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+B2M	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TNFRSF14	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+HIST1H1C	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TMEM30A	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TMSB4X	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	FALSE
+EBF1	bohleRoleEarlyBcell2013	1	NA	FALSE
+CD58	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TNFAIP3	compagnoMutationsMultipleGenes2009a	1	NA	FALSE
+KMT2D	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+MEF2B	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+NFKBIA	lakeMutationsNFKBIAEncoding2009	1	NA	FALSE
+HLA-C	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+RHOA	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+EEF1A1	hubschmannMutationalMechanismsShaping2021b	1	NA	FALSE
+UBE2A	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+EZH2	morinSomaticMutationsAltering2010a	1	NA	FALSE
+POU2AF1	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+HIST1H1E	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+POU2F2	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+BRAF	tiacciBRAFMutationsHairycell2011a	1	NA	FALSE
+SGK1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+IGLL5	chapuyMolecularSubtypesDiffuse2018b	2	NA	TRUE
+STAT3	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+GNA13	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BCL6	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+ACTB	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+STAT6	yildizActivatingSTAT6Mutations2015c	1	NA	FALSE
+LYN	chapuyMolecularSubtypesDiffuse2018b	2	PASS	TRUE
+HVCN1	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+ETV6	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+NOTCH2	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+CXCR4	khodabakhshiRecurrentTargetsAberrant2012	1	NA	FALSE
+KRAS	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+IKZF3	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TOX	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+HIST1H1B	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+HIST1H2BC	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+CRIP1	chapuyMolecularSubtypesDiffuse2018b	2	PASS	TRUE
+HIST1H2AC	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+PTPN6	reddyGeneticFunctionalDrivers2017	2	PASS	FALSE
+BCL10	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CD83	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+PTEN	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+EP300	pasqualucciInactivatingMutationsAcetyltransferase2011a	1	NA	FALSE
+GRB2	pasqualucciAnalysisCodingGenome2011	1	NA	FALSE
+NFKBIE	morinGeneticLandscapesRelapsed2016	1	NA	FALSE
+HIST1H2BK	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+ZC3H12A	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+XPO1	mareschalWholeExomeSequencing2016	1	NA	FALSE
+IRF8	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+SPEN	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	FALSE
+CD274	morinFrequentMutationHistonemodifying2011	2	NA	FALSE
+HIST1H1D	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+ZFP36L1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+RAD9A	chapuyMolecularSubtypesDiffuse2018b	3	FAIL	TRUE
+DTX1	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+YY1	reddyGeneticFunctionalDrivers2017	2	PASS	FALSE
+NAV1	chapuyMolecularSubtypesDiffuse2018b	2	NA	TRUE
+CCL4	chapuyMolecularSubtypesDiffuse2018b	3	FAIL	TRUE
+HIST1H2AM	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+LTB	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+SMEK1	zhangGeneticHeterogeneityDiffuse2013	2	NA	FALSE
+NANOG	chapuyMolecularSubtypesDiffuse2018b	3	FAIL	TRUE
+HLA-DMA	chapuyMolecularSubtypesDiffuse2018b	2	NA	TRUE
+SIN3A	chapuyMolecularSubtypesDiffuse2018b	1	NA	TRUE
+ETS1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+PRKCB	morinMutationalStructuralAnalysis2013	2	PASS	FALSE
+PRPS1	chapuyMolecularSubtypesDiffuse2018b	2	PASS	TRUE
+PDE4DIP	chapuyMolecularSubtypesDiffuse2018b	3	FAIL	TRUE
+TLR2	chapuyMolecularSubtypesDiffuse2018b	2	PASS	TRUE
+ZNF423	chapuyMolecularSubtypesDiffuse2018b	2	PASS	TRUE
+SF3B1	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+CIITA	morinFrequentMutationHistonemodifying2011	2	NA	FALSE
+NLRP8	chapuyMolecularSubtypesDiffuse2018b	3	FAIL	TRUE
+BCL11A	chapuyMolecularSubtypesDiffuse2018b	2	NA	TRUE
+ZEB2	zhangGeneticHeterogeneityDiffuse2013	2	NA	FALSE
+GNAI2	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+FUT5	chapuyMolecularSubtypesDiffuse2018b	3	FAIL	TRUE
+HIST1H3B	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+HIST2H2BE	schmitzGeneticsPathogenesisDiffuse2018a	1	NA	FALSE
+COQ7	chapuyMolecularSubtypesDiffuse2018b	2	PASS	TRUE
+IL6	chapuyMolecularSubtypesDiffuse2018b	2	PASS	TRUE

resources/curated/individual_study_lists/DLBCL/annotated_hubschmannMutationalMechanismsShaping2021b.tsv

@@ -0,0 +1,91 @@
+Gene	citekey	Tier	QC	Novel
+ACTB	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+ACTG1	hubschmannMutationalMechanismsShaping2021b	1	NA	TRUE
+ADAMTS1	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+ANKRD12	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+ARID1A	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+B2M	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BCL2	tanakaFrequentIncidenceSomatic1992	1	NA	FALSE
+BCL6	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BCL7A	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+BRAF	tiacciBRAFMutationsHairycell2011a	1	NA	FALSE
+BTG2	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CADPS2	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+CARD11	lenzOncogenicCARD11Mutations2008	1	NA	FALSE
+CCND3	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CD58	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CD74	arthurGenomewideDiscoverySomatic2018	2	NA	FALSE
+CD79B	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+CD83	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+CDKN2A	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+CNOT2	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+CREBBP	pasqualucciInactivatingMutationsAcetyltransferase2011a	1	NA	FALSE
+CXCR4	khodabakhshiRecurrentTargetsAberrant2012	1	NA	FALSE
+DHX16	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+DMXL1	zhangGeneticHeterogeneityDiffuse2013	3	NA	FALSE
+DNM2	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+EBF1	bohleRoleEarlyBcell2013	1	NA	FALSE
+EEF1A1	hubschmannMutationalMechanismsShaping2021b	1	NA	TRUE
+EP300	pasqualucciInactivatingMutationsAcetyltransferase2011a	1	NA	FALSE
+EZH2	morinSomaticMutationsAltering2010a	1	NA	FALSE
+FAS	schollMutationsRegionFAS2007	1	NA	FALSE
+FBXO11	hubschmannMutationalMechanismsShaping2021b	1	NA	TRUE
+FBXW7	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+FOXO1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+FUBP1	reddyGeneticFunctionalDrivers2017	2	PASS	FALSE
+GAK	hubschmannMutationalMechanismsShaping2021b	3	FAIL	TRUE
+GNA13	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+GNAI2	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+GRB2	pasqualucciAnalysisCodingGenome2011	1	NA	FALSE
+HIST1H2AC	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+HLA-A	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+HLA-B	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+HLA-DMB	hubschmannMutationalMechanismsShaping2021b	1	NA	TRUE
+HLA-DQA1	hubschmannMutationalMechanismsShaping2021b	3	FAIL	TRUE
+IKBKE	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+IL4R	dunsCharacterizationDLBCLPMBL2021b	1	NA	FALSE
+INO80	zhangGeneticHeterogeneityDiffuse2013	2	NA	FALSE
+IRF1	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+IRF8	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+JUNB	reddyGeneticFunctionalDrivers2017	1	PASS	FALSE
+LAPTM5	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+LRP12	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+MEF2C	arthurGenomewideDiscoverySomatic2018	1	NA	FALSE
+KMT2D	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+MYD88	ngoOncogenicallyActiveMYD882011a	1	NA	FALSE
+NFKBIA	lakeMutationsNFKBIAEncoding2009	1	NA	FALSE
+NFKBIE	morinGeneticLandscapesRelapsed2016	1	NA	FALSE
+NOTCH2	zhangGeneticHeterogeneityDiffuse2013	1	NA	FALSE
+NR2F2	hubschmannMutationalMechanismsShaping2021b	3	FAIL	TRUE
+PDS5B	morinMutationalStructuralAnalysis2013	2	PASS	FALSE
+PIM1	pasqualucciHypermutationMultipleProtooncogenes2001a	1	NA	FALSE
+PNPO	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+PRKDC	schmitzGeneticsPathogenesisDiffuse2018a	2	NA	FALSE
+PTPN6	reddyGeneticFunctionalDrivers2017	2	PASS	FALSE
+RAC2	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+RRAGC	okosunRecurrentMTORC1activatingRRAGC2016a	1	NA	FALSE
+SGK1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+SIAH2	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+SIN3A	chapuyMolecularSubtypesDiffuse2018b	1	NA	FALSE
+SLC34A2	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+SOCS1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+SPEN	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	FALSE
+STAT3	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+STAT6	yildizActivatingSTAT6Mutations2015c	1	NA	FALSE
+TAF1	morinMutationalStructuralAnalysis2013	1	NA	FALSE
+TBL1XR1	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+TET2	albuquerqueEnhancingKnowledgeDiscovery2017a	1	NA	FALSE
+TMEM30A	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TNFAIP3	compagnoMutationsMultipleGenes2009a	1	NA	FALSE
+TOX	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+TNFRSF14	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+TOX	reddyGeneticFunctionalDrivers2017	1	NA	FALSE
+TP53	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+TRAF6	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+UBE2A	lohrDiscoveryPrioritizationSomatic2012a	1	NA	FALSE
+UNC5B	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+WNK1	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+XPO1	mareschalWholeExomeSequencing2016	1	NA	FALSE
+ZFP36L1	morinFrequentMutationHistonemodifying2011	1	NA	FALSE
+ZNF217	hubschmannMutationalMechanismsShaping2021b	2	PASS	TRUE
+ZNF292	reddyGeneticFunctionalDrivers2017	1	NA	FALSE

resources/curated/individual_study_lists/DLBCL/annotated_khodabakhshiRecurrentTargetsAberrant2012.tsv

@@ -0,0 +1,2 @@
+Gene	citekey	Tier	QC	Novel
+CXCR4	khodabakhshiRecurrentTargetsAberrant2012	1	NA	TRUE

resources/curated/individual_study_lists/DLBCL/annotated_lenzOncogenicCARD11Mutations2008.tsv

@@ -0,0 +1,2 @@
+Gene	citekey	Tier	QC	Novel
+CARD11	lenzOncogenicCARD11Mutations2008	1	NA	TRUE