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Remove blood immunity from p.v model #317

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merged 1 commit into from
Oct 9, 2024

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RJSheppard
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p.f models blood immunity impact on new infections, while p.v does not. An if statement is added to the human_infection.R code to reflect this.

IB immunity is therefore also redundant, these variable assignments, immunity decay, boosts and rendering are removed when parasite == "vivax".

The blood immunity parameters have now been removed from the vivax parameter list, and documentation has been adjusted to reflect this.

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Two tiny formatting suggestions

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/benchmark

@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_constant_asymptomatic_infectivity branch 5 times, most recently from ac353fd to 5cd9688 Compare September 17, 2024 12:08
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_no_blood_immunity branch from 693e212 to a570996 Compare September 17, 2024 13:33
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_constant_asymptomatic_infectivity branch from 5cd9688 to f5df32d Compare October 1, 2024 13:00
@giovannic giovannic force-pushed the vivax_competing_hazards_main_constant_asymptomatic_infectivity branch from f5df32d to 97837f3 Compare October 1, 2024 15:09
Base automatically changed from vivax_competing_hazards_main_constant_asymptomatic_infectivity to dev October 7, 2024 15:40
…t. An if statement is added to the human_infection.R code to reflect this.

IB immunity is therefore also redundant in the Pv model. These variable assignments, immunity decay, boosts, rendering, and resetting during mortality  are removed when parasite == "vivax".

The blood immunity parameters have now been removed from the vivax parameter list, and documentation has been adjusted to reflect this.
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_no_blood_immunity branch from a570996 to e733b28 Compare October 8, 2024 15:11
@giovannic giovannic merged commit ad53f50 into dev Oct 9, 2024
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@giovannic giovannic deleted the vivax_competing_hazards_main_no_blood_immunity branch October 9, 2024 10:54
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3 participants