Consensus character reconstruction #259
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1 error and 4 warnings
Run r-lib/actions/setup-r@v2
No such keg: /opt/homebrew/Cellar/[email protected]
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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Install dependencies
dependencies ‘TreeDistData’, ‘Biostrings’, ‘Biobase’, ‘MassSpecWavelet’, ‘marray’, ‘affy’, ‘limma’, ‘orcutt’, ‘BiocVersion’, ‘BiocStyle’, ‘starsdata’, ‘rnaturalearthhires’, ‘spDataLarge’, ‘choroplethr’, ‘graph’, ‘Rgraphviz’, ‘taxidata’, ‘ComplexHeatmap’, ‘snpStats’, ‘cmdstanr’, ‘glmmADMB’, ‘Vdgraph’, ‘INLA’, ‘sylly.de’, ‘sylly.es’, ‘NetSwan’, ‘mvPot’, ‘biomaRt’, ‘KEGGgraph’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘M3C’, ‘globaltest’, ‘blavsam’, ‘iwmm’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘dimRed’, ‘gurobi’, ‘mlr3proba’, ‘rrelaxiv’, ‘pkgmaker’, ‘ExactData’, ‘GenomicRanges’, ‘IRanges’, ‘S4Vectors’, ‘RDCOMClient’, ‘genefilter’, ‘sva’, ‘RTCGA.rnaseq’, ‘Icens’, ‘rhdf5’, ‘mixOmics’ are not available
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Run r-lib/actions/setup-r@v2
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Run r-lib/actions/setup-r@v2
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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