minor: updated reference file in ctl

mshakya · Apr 2, 2020 · 412a0c5 · 412a0c5
1 parent 7ae708b
commit 412a0c5
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/test/ctl_files/t1_ebola_preads.ctl b/test/ctl_files/t1_ebola_preads.ctl
@@ -11,7 +11,7 @@
       buildSNPdb = 0 # 0: only align to reference 1: build SNP database of all complete genome
 
     FirstTime = 1  # 1:yes; 2:update existing SNP alignment
-      aligner = bowtie # bwa: bwa mem; bowtie: bowtie2
+      aligner = bwa # bwa: bwa mem; bowtie: bowtie2
 
          data = 4  # *See below 0:only complete(F); 1:only contig(C); 2:only reads(R); 
                    # 3:combination F+C; 4:combination F+R; 5:combination C+R; 

diff --git a/test/ctl_files/t3_ebola_contigs.ctl b/test/ctl_files/t3_ebola_contigs.ctl
@@ -2,7 +2,7 @@
       workdir = ../workdirs/t3_ebola_contigs # directory where contigs/reads files are located and output is stored
 
     reference = 1  # 0:pick a random reference; 1:use given reference; 2: use ANI based reference
-      reffile =  KJ660347.fasta  # reference filename 
+      reffile =  KJ660347.ref_genome.fasta  # reference filename 
 
       project = t3  # main alignment file name
 

diff --git a/test/ctl_files/t5_ebola_cmp_ctgs.ctl b/test/ctl_files/t5_ebola_cmp_ctgs.ctl
@@ -2,7 +2,7 @@
       workdir = ../workdirs/t5_ebola_complete_contigs # directory where contigs/reads files are located and output is stored
 
     reference = 1  # 0:pick a random reference; 1:use given reference; 2: use ANI based reference
-      reffile = KJ660347.fasta  # reference filename 
+      reffile = KJ660347.ref_genome.fasta  # reference filename 
 
       project = t5  # main alignment file name