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@mshakya mshakya released this 03 Apr 20:49
· 269 commits to master since this release
0.3
a619645
  • the release now effectively uses mash to select genome based on ANI
  • readstoGenome.pl script now uses the specified thread, before it was using 8, no matter what was specified
  • PAML, if installed correctly works for the genes, and gives a nice table with dN/dS ratio and corresponding L score.
  • PAML now uses RaxML tree even if FastTree is selected. RaxML tree is made for PAML analysis
  • HyPhy installation script added, which is still having a bit of problem, but once installed correctly, it can run few Hyphy modules. It only, however, includes the genes that do not have any gaps in the alignment.
  • Dockerfile is added. Dockerized version can be used.
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