Update cellranger.py

mskcc · Nov 24, 2023 · b1ab663 · b1ab663
1 parent 4f51ad9
commit b1ab663
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/scripts/cellranger.py b/scripts/cellranger.py
@@ -203,6 +203,7 @@ def create_library_csv_file(ge_sample_path, atac_sample_path, sample_ID):
 
 def get_sequencer_runID(fastq_path):
     runID = fastq_path.split("/")[4]
+    runID = "_".join(runID.split("_")[0:3])
     sequencer = runID.split("_")[0].lower()
     return sequencer, runID