0.8.0

Improvements and tests

#116 somatic-test: msisensor
#157 Modify Nextflow Trace Setting to get detailed run report

Pipeline Adjustments

make_bam_and_qc.nf
#61 Purge Sarek legacy code
#161 Change make_bam to accept new input format
#162 Implement output of make_bam_and_qc step to be the input for somatic

somatic.nf
#58 Mutational Signatures: create a Docker image for this, and push to Dockerhub
#137 HLA-LOH: Dockerize LOHHLA
#168 Make new bcftools container with ps command
#46 Implement interval file usage
#145 Add callRegions for manta/strelka2
#139 Dockerize Conpair
#146 Add file exclusions for delly
germline.nf
#46 Implement interval file usage
#145 Add callRegions for manta/strelka2