NAMESPACE

# Generated by roxygen2: do not edit by hand

export(GC.fun)
export(MAP.fun)
export(PrepareCov)
export(bam.cov.skel)
export(coco)
export(correctcov_stub)
export(fragCounter)
export(make.blacklist)
export(multicoco)
import(GenomeInfoDb)
import(GenomicRanges)
import(gUtils)
import(rtracklayer)
importFrom(Biostrings,alphabetFrequency)
importFrom(DNAcopy,CNA)
importFrom(DNAcopy,segment)
importFrom(DNAcopy,smooth.CNA)
importFrom(GenomeInfoDb,seqlengths)
importFrom(IRanges,IRanges)
importFrom(Rsamtools,BamFile)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,rbindlist)
importFrom(data.table,set)
importFrom(data.table,setkey)
importFrom(data.table,setkeyv)
importFrom(data.table,setnames)
importFrom(data.table,transpose)
importFrom(grDevices,col2rgb)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(grDevices,rgb)
importFrom(graphics,lines)
importFrom(graphics,plot)
importFrom(parallel,mclapply)
importFrom(skidb,read_gencode)
importFrom(stats,cor)
importFrom(stats,loess)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(utils,globalVariables)