Regenerate docs for github pages

mskilab-org · Jun 15, 2023 · 8189e02 · 8189e02
1 parent c81dd8f
commit 8189e02
Show file tree

Hide file tree

Showing 103 changed files with 1,097 additions and 209 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -39,7 +39,7 @@ LinkingTo: Rcpp
 License: GPL-2
 LazyData: true
 BugReports: http://github.com/mskilab/gTrack/issues
-RoxygenNote: 7.1.2
+RoxygenNote: 7.2.3
 Suggests:
     testthat (>= 2.0),
     covr,

diff --git a/README.md b/README.md
@@ -11,18 +11,18 @@ R package for plotting tracks of 1D and 2D genomic data stored in GenomicRanges,
 
 Installation
 -----------
-```{r}
+```r
 ## allows dependencies that throw warnings to install
 Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS = TRUE) 
 
 ## install with devtools
-devtools::install_github('mskilab/gTrack)
+devtools::install_github('mskilab-org/gTrack')
 ```
 
 See documentation
-
-[Read the docs](http://gtrack.readthedocs.org/en/latest/)
-[R Documentation](https://raw.githubusercontent.com/mskilab/gTrack/master/gTrack.pdf)
+[Quickstart](http://mskilab-org.github.io/gTrack/articles/quickstart.html)
+[Read the docs](http://mskilab-org.github.io/gTrack/index.html)
+[R Documentation](http://mskilab-org.github.io/gTrack/reference/index.html)
 
 Tutorial 
 --------

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/gtrackparams.html b/docs/articles/gtrackparams.html
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-10-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-11-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-11-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-12-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-12-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-13-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-13-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-14-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-14-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-15-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-15-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-16-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-16-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-17-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-17-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-18-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-18-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-19-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-19-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-2-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-2-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-20-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-20-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-21-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-21-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-22-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-22-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-23-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-23-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-24-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-24-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-3-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-4-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-5-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-6-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-6-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-7-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-7-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-8-1.png
diff --git a/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-9-1.png b/docs/articles/gtrackparams_files/figure-html/unnamed-chunk-9-1.png
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/quickstart.html b/docs/articles/quickstart.html
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-10-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-11-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-11-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-12-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-12-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-13-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-13-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-14-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-14-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-15-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-15-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-16-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-16-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-17-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-17-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-18-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-18-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-19-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-19-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-20-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-20-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-4-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-5-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-6-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-6-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-8-1.png
diff --git a/docs/articles/quickstart_files/figure-html/unnamed-chunk-9-1.png b/docs/articles/quickstart_files/figure-html/unnamed-chunk-9-1.png
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,8 +1,8 @@
-pandoc: 2.2.3.2
-pkgdown: 2.0.6
+pandoc: 3.1.3
+pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
-  quickstart: quickstart.html
   gtrackparams: gtrackparams.html
-last_built: 2023-05-16T18:31Z
+  quickstart: quickstart.html
+last_built: 2023-06-15T18:30Z
 
diff --git a/docs/reference/affine-map-methods.html b/docs/reference/affine-map-methods.html
diff --git a/docs/reference/alpha.html b/docs/reference/alpha.html
diff --git a/docs/reference/barbs.html b/docs/reference/barbs.html
diff --git a/docs/reference/bernsteinp.html b/docs/reference/bernsteinp.html
diff --git a/docs/reference/blend.html b/docs/reference/blend.html
diff --git a/docs/reference/brewer.master.html b/docs/reference/brewer.master.html
diff --git a/docs/reference/c-methods.html b/docs/reference/c-methods.html