refactor: update resource usages

mskilab-org · Jul 7, 2024 · f140abe · f140abe
1 parent dc3dc6f
commit f140abe
Showing 1 changed file with 15 additions and 15 deletions.
diff --git a/conf/base.config b/conf/base.config
@@ -114,11 +114,6 @@ process {
     withName: 'GRIDSS_SOMATIC' {
         cpus            = { check_max( 2 * task.attempt, 'cpus' ) }
         memory          = { check_max( 48.GB * task.attempt, 'memory' ) }
-        time            = { check_max( 8.h  * task.attempt, 'time'    ) }
-    }
-    withName: 'JUNCTION_FILTER' {
-        cpus            = { check_max( 2 * task.attempt, 'cpus' ) }
-        memory          = { check_max( 128.GB * task.attempt, 'memory' ) }
         time            = { check_max( 16.h  * task.attempt, 'time'    ) }
     }
     withName: 'HETPILEUPS' {
@@ -156,19 +151,24 @@ process {
         memory          = { check_max( 16.GB * task.attempt, 'memory' ) }
         time            = { check_max( 1.h  * task.attempt, 'time'    ) }
     }
+    withName: 'COERCE_SEQNAMES' {
+        cpus             = { check_max( 2     * task.attempt, 'cpus'    ) }
+        memory           = { check_max( 12.GB * task.attempt, 'memory'  ) }
+        time             = { check_max( 16.h   * task.attempt, 'time'    ) }
+    }
     withName: 'JABBA' {
-        cpus            = { check_max( 8 * task.attempt, 'cpus' ) }
-        memory          = { check_max( 72.GB * task.attempt, 'memory' ) }
+        cpus            = { check_max( 16 * task.attempt, 'cpus' ) }
+        memory          = { check_max( 80.GB * task.attempt, 'memory' ) }
         time            = { check_max( 16.h  * task.attempt, 'time'    ) }
     }
     withName: 'EVENTS' {
-        cpus            = { check_max( 2 * task.attempt, 'cpus' ) }
+        cpus            = { check_max( 3 * task.attempt, 'cpus' ) }
         memory          = { check_max( 8.GB * task.attempt, 'memory' ) }
         time            = { check_max( 4.h  * task.attempt, 'time'    ) }
     }
     withName: 'FUSIONS' {
-        cpus            = { check_max( 4 * task.attempt, 'cpus' ) }
-        memory          = { check_max( 64.GB * task.attempt, 'memory' ) }
+        cpus            = { check_max( 5 * task.attempt, 'cpus' ) }
+        memory          = { check_max( 80.GB * task.attempt, 'memory' ) }
         time            = { check_max( 4.h  * task.attempt, 'time'    ) }
     }
     withName: 'NON_INTEGER_BALANCE' {
@@ -177,18 +177,18 @@ process {
         time            = { check_max( 4.h  * task.attempt, 'time'    ) }
     }
     withName: 'LP_PHASED_BALANCE' {
-        cpus            = { check_max( 8 * task.attempt, 'cpus' ) }
-        memory          = { check_max( 8.GB * task.attempt, 'memory' ) }
-        time            = { check_max( 4.h  * task.attempt, 'time'    ) }
+        cpus            = { check_max( 16 * task.attempt, 'cpus' ) }
+        memory          = { check_max( 16.GB * task.attempt, 'memory' ) }
+        time            = { check_max( 8.h  * task.attempt, 'time'    ) }
     }
     withName: 'HRDETECT' {
         cpus            = { check_max( 4 * task.attempt, 'cpus' ) }
-        memory          = { check_max( 16.GB * task.attempt, 'memory' ) }
+        memory          = { check_max( 6.GB * task.attempt, 'memory' ) }
         time            = { check_max( 6.h  * task.attempt, 'time'    ) }
     }
     withName: 'SIGPROFILERASSIGNMENT' {
         cpus            = { check_max( 2 * task.attempt, 'cpus' ) }
-        memory          = { check_max( 4.GB * task.attempt, 'memory' ) }
+        memory          = { check_max( 8.GB * task.attempt, 'memory' ) }
         time            = { check_max( 1.h  * task.attempt, 'time'    ) }
     }
     withName: 'SNPEFF_SNPEFF' {