Merge branch 'schema' into dev

Conflicts: modules/local/jabba/main.nf nextflow.config
mskilab-org · Nov 7, 2023 · 15aba2e · 15aba2e
2 parents a22749d + 3bdb964
commit 15aba2e
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Showing 4 changed files with 327 additions and 199 deletions.
diff --git a/main.nf b/main.nf
@@ -60,6 +60,7 @@ params.build_dryclean        = WorkflowMain.getGenomeAttribute(params, 'build_dr
 params.hapmap_sites          = WorkflowMain.getGenomeAttribute(params, 'hapmap_sites')
 params.pon_dryclean          = WorkflowMain.getGenomeAttribute(params, 'pon_dryclean')
 params.blacklist_coverage_jabba     = WorkflowMain.getGenomeAttribute(params, 'blacklist_coverage_jabba')
+//params.blacklist_junctions_jabba     = WorkflowMain.getGenomeAttribute(params, 'blacklist_junctions_jabba')
 
 /*
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

diff --git a/nextflow.config b/nextflow.config
@@ -112,7 +112,7 @@ params {
     slack_jabba = 100
     linear_jabba = "TRUE"
     tilim_jabba = 7200
-    epgap_jabba = 1e-8
+    epgap_jabba = 0.00000001
     fix_thres_jabba = -1
     lp_jabba = "TRUE"
     ism_jabba = "TRUE"