DESCRIPTION

Package: readsupport
Title: R package providing ability to assess read support for structural variants. 
Version: 0.0.0
Authors@R: c(
    person("Zi-Ning", "Choo", role = c("aut"),  email = "zchoo@nygenome.org"),
    person("Marcin", "Imielinski", role = c("aut", "cre"), email =
    "mimielinski@nygenome.org"))
Description: The readsupport enables the evaluation of read support for junctions and rearranged contigs of arbitrary complexity and is useful forvetting, genotyping, and co-calling structural variants.
Remotes: 
  github::mskilab/bamUtils,
  github::mskilab/gUtils,
  github::mskilab/gChain,
  github::mskilab/gGnome,
  github::mskilab/gTrack,
  github::mskilab/RSeqLib,
  bioc::3.10/GenomicRanges,
  bioc::3.10/rtracklayer,
  bioc::3.10/Rsamtools,
Depends:
    R (>= 3.6.0),
    data.table (>= 1.11),
    bamUtils,
    gTrack,
    gUtils,
    gChain,
    gGnome,
    Biostrings,
    GenomicRanges,
    igraph,
    Matrix,
    RSeqLib, 
    reshape2,
Imports:
    methods,
    rtracklayer
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Suggests: 
    testthat (>= 3.0.0)
Config/testthat/edition: 3