test r

mspodda · May 24, 2024 · 3b5d25d · 3b5d25d
1 parent 5a805af
commit 3b5d25d
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diff --git a/workflow/R/R_custom.R b/workflow/R/R_custom.R
@@ -1,5 +1,5 @@
 ### Create and load vector of packages
-source("config_all.R")
+source("/home/runner/work/isoworm/isoworm/workflow/R/config_all.R")
 lapply(my_packages, require, character.only = TRUE) 
 library(data.table)
 ### Create a list with all txt files containing the samples for each tissues

diff --git a/workflow/R/config_all.R b/workflow/R/config_all.R
@@ -37,7 +37,7 @@ group.colors_pie_chart <- c()
 txt_samples <- "/home/runner/work/isoworm/isoworm/test_data"
 results_dir <- "/home/runner/work/isoworm/isoworm/results"
 polyA_bam_dir <- ""
-final_output <- "/home/runner/work/isoworm/isoworm/R"
+final_output <- "/home/runner/work/isoworm/isoworm/workflow/R"
 ## total salmon
 indexDir <- file.path("")
 fasta <- file.path("")