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v3.2.1 Cenote-Taker 3: In the Skeloton
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@mtisza1 mtisza1 released this 09 Feb 22:45
· 23 commits to main since this release
v3.2.1
74e2d77
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Learn about vigilant mode.

Changes from v3.2.0:

  1. Added -wd/--working_directory flags for specifying working directory for outputs.
  2. Added pyarrow to enviroment files. Prevents pandas futurewarning.
  3. Fixed downcasting in fillna() commands in python/pandas.
  4. Fixed paths so that hhsuite databases are download and referred to correctly.
  5. Added --genbank flag which allows users to disable genbank outputs.
  6. Fixed taxonomy lineage parsing in vote_taxonomy.py in certain cases.
  7. Fixed hhpred_to_table.py parsing of hhsuite output files to correctly hand CDD and PDB accessions/descriptions.
  8. Updated scripts so that in annotation mode -am True (unless flag --caller adaptive) to skip unnecessary initial pyhmmer steps. This reduced runtime by about 25%.
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