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107 Open 1,106 Closed
107 Open 1,106 Closed
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Issues list

Dorado basecalling: handling fail, pass, and skip reads
#1241 opened Feb 4, 2025 by Patricie34
1
Distribution as Docker and/or conda package
#1240 opened Feb 3, 2025 by marchoeppner
Low Qscore after Dorado basecalling - P2 solo - ultra long reads
#1239 opened Jan 31, 2025 by jefferalexdurfue
Could dorado --estimate-poly-a provides the start and end of the estimated polyA(T) tail positions? enhancement New feature or request polyA Issue related to polyA tail estimation
#1235 opened Jan 28, 2025 by abcdtree
3
Does Dorado give high false positive rate for 6mA? mods For issues related to modified base calling
#1234 opened Jan 28, 2025 by Pombeboy
4
Plasmid poly(A) Disagreement Between 0.8.0 and 0.9.1 polyA Issue related to polyA tail estimation
#1233 opened Jan 28, 2025 by VBHerrenC
6
Dorado repeat expansion
#1231 opened Jan 27, 2025 by tanyasarkjain
2
Duplex + Polish
#1230 opened Jan 27, 2025 by strejcem
1
PCR primers and barcodes not apparent in large portion of reads
#1229 opened Jan 27, 2025 by smith12380
Dorado polish index error polish Issues related to polishing
#1227 opened Jan 23, 2025 by gwaldbieser
Barcode demultiplexing method not to separate multiple sequence runs question Issue is a question
#1226 opened Jan 22, 2025 by erepolliuchi
1
input reads for dorado polish Q polish Issues related to polishing question Issue is a question
#1225 opened Jan 21, 2025 by bruzecruise
2
default_thread_allocations should not use std::thread::hardware_concurrency() enhancement New feature or request
#1223 opened Jan 20, 2025 by jbd
1
dorado v0.9.0 does not remove adapter sequences from Ultra-long data bug Something isn't working trim Issues related to adapter/primer trimming
#1219 opened Jan 16, 2025 by is01
8
dorado correct empty output read_correction Read error correction
#1217 opened Jan 15, 2025 by malton-ont
3
Basecalling/demux+modbases: std::bad_alloc barcode Issues related to barcoding bug Something isn't working
#1213 opened Jan 9, 2025 by sklages
6
Feature request: Option for unsorted BAM output by dorado aligner
#1211 opened Jan 8, 2025 by cihanerkut
2
Dorado duplex using older dna model for V10? duplex Issues related to duplex basecalling question Issue is a question
#1210 opened Jan 6, 2025 by Patricie34
9
Difference between the [email protected] and [email protected] ? performance Issues related to basecalling performance
#1208 opened Jan 3, 2025 by VBHarrisN
6
QV score lower post dorado polish polish Issues related to polishing
#1205 opened Dec 31, 2024 by HananAlmulla
1
Documentation request for dorado polish per-base quality score output documentation Improvements or additions to documentation enhancement New feature or request polish Issues related to polishing
#1200 opened Dec 27, 2024 by eernst
3
dorado basecalling bam file end up corrupt during sort
#1197 opened Dec 26, 2024 by uribertocchi
7
Polishing index error polish Issues related to polishing
#1196 opened Dec 23, 2024 by ekhtan
13
Multi A100 expected CPU/GPU utilization in correction inference stage read_correction Read error correction
#1189 opened Dec 19, 2024 by ChristianKniep
2
Comparing the RTX 4090 and the RTX 6000 Ada
#1181 opened Dec 17, 2024 by ezherman
11
ProTip! no:milestone will show everything without a milestone.