Remove scale_name from discrete_scale() calls

R/continuous-gsea.R

@@ -29,7 +29,7 @@
 rgb_gsea <- function(palette = c("default"), n = 12, alpha = 1, reverse = FALSE) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"gsea"[[palette]]
   func_cols <- colorRamp(raw_cols, space = "Lab", interpolate = "spline")
@@ -97,7 +97,8 @@ pal_gsea <- function(palette = c("default"), n = 12, alpha = 1, reverse = FALSE)
 #'   aes(x = Var1, y = Var2, fill = value)
 #' ) +
 #'   geom_tile(colour = "black", size = 0.3) +
-#'   theme_bw() + scale_fill_gsea()
+#'   theme_bw() +
+#'   scale_fill_gsea()
 scale_color_gsea <- function(palette = c("default"), alpha = 1, reverse = FALSE, ...) {
   palette <- match.arg(palette)
   scale_color_gradientn(colours = rgb_gsea(palette, n = 512, alpha = alpha, reverse = reverse), ...)

R/continuous-material.R

@@ -47,14 +47,14 @@
 #' show_col(pal_material("indigo")(10))
 #' show_col(pal_material("indigo", n = 30, alpha = 0.6, reverse = TRUE)(30))
 rgb_material <- function(
-  palette = c(
-    "red", "pink", "purple", "deep-purple", "indigo", "blue",
-    "light-blue", "cyan", "teal", "green", "light-green", "lime",
-    "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
-  ), n = 10, alpha = 1, reverse = FALSE) {
+    palette = c(
+      "red", "pink", "purple", "deep-purple", "indigo", "blue",
+      "light-blue", "cyan", "teal", "green", "light-green", "lime",
+      "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
+    ), n = 10, alpha = 1, reverse = FALSE) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"material"[[palette]]
   func_cols <- colorRamp(raw_cols, space = "Lab", interpolate = "spline")
@@ -87,11 +87,11 @@ rgb_material <- function(
 #' show_col(pal_material("indigo")(10))
 #' show_col(pal_material("indigo", n = 30, alpha = 0.6, reverse = TRUE)(30))
 pal_material <- function(
-  palette = c(
-    "red", "pink", "purple", "deep-purple", "indigo", "blue",
-    "light-blue", "cyan", "teal", "green", "light-green", "lime",
-    "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
-  ), n = 10, alpha = 1, reverse = FALSE) {
+    palette = c(
+      "red", "pink", "purple", "deep-purple", "indigo", "blue",
+      "light-blue", "cyan", "teal", "green", "light-green", "lime",
+      "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
+    ), n = 10, alpha = 1, reverse = FALSE) {
   palette <- match.arg(palette)
 
   alpha_cols <- rgb_material(palette, n, alpha, reverse)
@@ -127,13 +127,14 @@ pal_material <- function(
 #'   aes(x = Var1, y = Var2, fill = value)
 #' ) +
 #'   geom_tile(colour = "black", size = 0.3) +
-#'   theme_bw() + scale_fill_material("blue-grey")
+#'   theme_bw() +
+#'   scale_fill_material("blue-grey")
 scale_color_material <- function(
-  palette = c(
-    "red", "pink", "purple", "deep-purple", "indigo", "blue",
-    "light-blue", "cyan", "teal", "green", "light-green", "lime",
-    "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
-  ), alpha = 1, reverse = FALSE, ...) {
+    palette = c(
+      "red", "pink", "purple", "deep-purple", "indigo", "blue",
+      "light-blue", "cyan", "teal", "green", "light-green", "lime",
+      "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
+    ), alpha = 1, reverse = FALSE, ...) {
   palette <- match.arg(palette)
   scale_color_gradientn(
     colours = rgb_material(
@@ -152,11 +153,11 @@ scale_colour_material <- scale_color_material
 #' @importFrom ggplot2 scale_fill_gradientn
 #' @rdname scale_material
 scale_fill_material <- function(
-  palette = c(
-    "red", "pink", "purple", "deep-purple", "indigo", "blue",
-    "light-blue", "cyan", "teal", "green", "light-green", "lime",
-    "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
-  ), alpha = 1, reverse = FALSE, ...) {
+    palette = c(
+      "red", "pink", "purple", "deep-purple", "indigo", "blue",
+      "light-blue", "cyan", "teal", "green", "light-green", "lime",
+      "yellow", "amber", "orange", "deep-orange", "brown", "grey", "blue-grey"
+    ), alpha = 1, reverse = FALSE, ...) {
   palette <- match.arg(palette)
   scale_fill_gradientn(
     colours = rgb_material(

R/discrete-aaas.R

@@ -25,7 +25,7 @@
 pal_aaas <- function(palette = c("default"), alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"aaas"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -64,17 +64,19 @@ pal_aaas <- function(palette = c("default"), alpha = 1) {
 #' ) +
 #'   geom_point(alpha = 0.7) +
 #'   geom_smooth(method = "loess", alpha = 0.1, size = 1, span = 1) +
-#'   theme_bw() + scale_color_aaas()
+#'   theme_bw() +
+#'   scale_color_aaas()
 #'
 #' ggplot(
 #'   subset(diamonds, carat > 2.2 & depth > 55 & depth < 70),
 #'   aes(x = depth, fill = cut)
 #' ) +
 #'   geom_histogram(colour = "black", binwidth = 1, position = "dodge") +
-#'   theme_bw() + scale_fill_aaas()
+#'   theme_bw() +
+#'   scale_fill_aaas()
 scale_color_aaas <- function(palette = c("default"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "aaas", pal_aaas(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_aaas(palette, alpha), ...)
 }
 
 #' @export scale_colour_aaas
@@ -86,5 +88,5 @@ scale_colour_aaas <- scale_color_aaas
 #' @rdname scale_aaas
 scale_fill_aaas <- function(palette = c("default"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "aaas", pal_aaas(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_aaas(palette, alpha), ...)
 }

R/discrete-cosmic.R

@@ -30,11 +30,11 @@
 #' show_col(pal_cosmic("signature_substitutions")(6))
 #' show_col(pal_cosmic("signature_substitutions", alpha = 0.6)(6))
 pal_cosmic <- function(
-  palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"),
-  alpha = 1) {
+    palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"),
+    alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"cosmic"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -73,19 +73,21 @@ pal_cosmic <- function(
 #' ) +
 #'   geom_point(alpha = 0.7) +
 #'   geom_smooth(method = "loess", alpha = 0.1, size = 1, span = 1) +
-#'   theme_bw() + scale_color_cosmic()
+#'   theme_bw() +
+#'   scale_color_cosmic()
 #'
 #' ggplot(
 #'   subset(diamonds, carat > 2.2 & depth > 55 & depth < 70),
 #'   aes(x = depth, fill = cut)
 #' ) +
 #'   geom_histogram(colour = "black", binwidth = 1, position = "dodge") +
-#'   theme_bw() + scale_fill_cosmic()
+#'   theme_bw() +
+#'   scale_fill_cosmic()
 scale_color_cosmic <- function(
-  palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"),
-  alpha = 1, ...) {
+    palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"),
+    alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "cosmic", pal_cosmic(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_cosmic(palette, alpha), ...)
 }
 
 #' @export scale_colour_cosmic
@@ -96,8 +98,8 @@ scale_colour_cosmic <- scale_color_cosmic
 #' @importFrom ggplot2 discrete_scale
 #' @rdname scale_cosmic
 scale_fill_cosmic <- function(
-  palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"),
-  alpha = 1, ...) {
+    palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"),
+    alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "cosmic", pal_cosmic(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_cosmic(palette, alpha), ...)
 }

R/discrete-d3.R

@@ -30,7 +30,7 @@
 pal_d3 <- function(palette = c("category10", "category20", "category20b", "category20c"), alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"d3"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -93,7 +93,7 @@ pal_d3 <- function(palette = c("category10", "category20", "category20b", "categ
 #' p2 + scale_fill_d3(palette = "category20c")
 scale_color_d3 <- function(palette = c("category10", "category20", "category20b", "category20c"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "d3", pal_d3(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_d3(palette, alpha), ...)
 }
 
 #' @export scale_colour_d3
@@ -105,5 +105,5 @@ scale_colour_d3 <- scale_color_d3
 #' @rdname scale_d3
 scale_fill_d3 <- function(palette = c("category10", "category20", "category20b", "category20c"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "d3", pal_d3(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_d3(palette, alpha), ...)
 }

R/discrete-flatui.R

@@ -26,7 +26,7 @@
 pal_flatui <- function(palette = c("default", "flattastic", "aussie"), alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"flatui"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -86,7 +86,7 @@ pal_flatui <- function(palette = c("default", "flattastic", "aussie"), alpha = 1
 #' p2 + scale_fill_flatui(palette = "aussie")
 scale_color_flatui <- function(palette = c("default", "flattastic", "aussie"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "flatui", pal_flatui(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_flatui(palette, alpha), ...)
 }
 
 #' @export scale_colour_flatui
@@ -98,5 +98,5 @@ scale_colour_flatui <- scale_color_flatui
 #' @rdname scale_flatui
 scale_fill_flatui <- function(palette = c("default", "flattastic", "aussie"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "flatui", pal_flatui(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_flatui(palette, alpha), ...)
 }

R/discrete-frontiers.R

@@ -22,7 +22,7 @@
 pal_frontiers <- function(palette = c("default"), alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"frontiers"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -60,7 +60,8 @@ pal_frontiers <- function(palette = c("default"), alpha = 1) {
 #' ) +
 #'   geom_point(alpha = 0.7) +
 #'   geom_smooth(method = "loess", alpha = 0.1, size = 1, span = 1) +
-#'   theme_dark() + theme(
+#'   theme_dark() +
+#'   theme(
 #'     panel.background = element_rect(fill = "#2D2D2D"),
 #'     legend.key = element_rect(fill = "#2D2D2D")
 #'   ) +
@@ -71,13 +72,14 @@ pal_frontiers <- function(palette = c("default"), alpha = 1) {
 #'   aes(x = depth, fill = cut)
 #' ) +
 #'   geom_histogram(colour = "black", binwidth = 1, position = "dodge") +
-#'   theme_dark() + theme(
+#'   theme_dark() +
+#'   theme(
 #'     panel.background = element_rect(fill = "#2D2D2D")
 #'   ) +
 #'   scale_fill_frontiers()
 scale_color_frontiers <- function(palette = c("default"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "frontiers", pal_frontiers(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_frontiers(palette, alpha), ...)
 }
 
 #' @export scale_colour_frontiers
@@ -89,5 +91,5 @@ scale_colour_frontiers <- scale_color_frontiers
 #' @rdname scale_frontiers
 scale_fill_frontiers <- function(palette = c("default"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "frontiers", pal_frontiers(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_frontiers(palette, alpha), ...)
 }

R/discrete-futurama.R

@@ -23,7 +23,7 @@
 pal_futurama <- function(palette = c("planetexpress"), alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"futurama"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -62,17 +62,19 @@ pal_futurama <- function(palette = c("planetexpress"), alpha = 1) {
 #' ) +
 #'   geom_point(alpha = 0.7) +
 #'   geom_smooth(method = "loess", alpha = 0.1, size = 1, span = 1) +
-#'   theme_bw() + scale_color_futurama()
+#'   theme_bw() +
+#'   scale_color_futurama()
 #'
 #' ggplot(
 #'   subset(diamonds, carat > 2.2 & depth > 55 & depth < 70),
 #'   aes(x = depth, fill = cut)
 #' ) +
 #'   geom_histogram(colour = "black", binwidth = 1, position = "dodge") +
-#'   theme_bw() + scale_fill_futurama()
+#'   theme_bw() +
+#'   scale_fill_futurama()
 scale_color_futurama <- function(palette = c("planetexpress"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "futurama", pal_futurama(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_futurama(palette, alpha), ...)
 }
 
 #' @export scale_colour_futurama
@@ -84,5 +86,5 @@ scale_colour_futurama <- scale_color_futurama
 #' @rdname scale_futurama
 scale_fill_futurama <- function(palette = c("planetexpress"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "futurama", pal_futurama(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_futurama(palette, alpha), ...)
 }

R/discrete-igv.R

@@ -30,7 +30,7 @@
 pal_igv <- function(palette = c("default", "alternating"), alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"igv"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -89,7 +89,7 @@ pal_igv <- function(palette = c("default", "alternating"), alpha = 1) {
 #' )
 scale_color_igv <- function(palette = c("default", "alternating"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "igv", pal_igv(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_igv(palette, alpha), ...)
 }
 
 #' @export scale_colour_igv
@@ -101,5 +101,5 @@ scale_colour_igv <- scale_color_igv
 #' @rdname scale_igv
 scale_fill_igv <- function(palette = c("default", "alternating"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "igv", pal_igv(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_igv(palette, alpha), ...)
 }

R/discrete-jama.R

@@ -24,7 +24,7 @@
 pal_jama <- function(palette = c("default"), alpha = 1) {
   palette <- match.arg(palette)
 
-  if (alpha > 1L | alpha <= 0L) stop("alpha must be in (0, 1]")
+  if (alpha > 1L || alpha <= 0L) stop("alpha must be in (0, 1]")
 
   raw_cols <- ggsci_db$"jama"[[palette]]
   raw_cols_rgb <- col2rgb(raw_cols)
@@ -56,24 +56,26 @@ pal_jama <- function(palette = c("default"), alpha = 1) {
 #' @examples
 #' library("ggplot2")
 #' data("diamonds")
-#' 
+#'
 #' ggplot(
 #'   subset(diamonds, carat >= 2.2),
 #'   aes(x = table, y = price, colour = cut)
 #' ) +
 #'   geom_point(alpha = 0.7) +
 #'   geom_smooth(method = "loess", alpha = 0.1, size = 1, span = 1) +
-#'   theme_bw() + scale_color_jama()
-#' 
+#'   theme_bw() +
+#'   scale_color_jama()
+#'
 #' ggplot(
 #'   subset(diamonds, carat > 2.2 & depth > 55 & depth < 70),
 #'   aes(x = depth, fill = cut)
 #' ) +
 #'   geom_histogram(colour = "black", binwidth = 1, position = "dodge") +
-#'   theme_bw() + scale_fill_jama()
+#'   theme_bw() +
+#'   scale_fill_jama()
 scale_color_jama <- function(palette = c("default"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("colour", "jama", pal_jama(palette, alpha), ...)
+  discrete_scale("colour", palette = pal_jama(palette, alpha), ...)
 }
 
 #' @export scale_colour_jama
@@ -85,5 +87,5 @@ scale_colour_jama <- scale_color_jama
 #' @rdname scale_jama
 scale_fill_jama <- function(palette = c("default"), alpha = 1, ...) {
   palette <- match.arg(palette)
-  discrete_scale("fill", "jama", pal_jama(palette, alpha), ...)
+  discrete_scale("fill", palette = pal_jama(palette, alpha), ...)
 }