re-run LV, HH, VdP

nathanaelbosch · Nov 14, 2023 · d63ba23 · d63ba23
1 parent 9fa5cbe
commit d63ba23
Show file tree

Hide file tree

Showing 39 changed files with 9,504 additions and 9,136 deletions.
diff --git a/benchmarks/hodgkinhuxley.jmd b/benchmarks/hodgkinhuxley.jmd
@@ -168,11 +168,6 @@ end
 plot_chisq_interval!(4)
 ```
 
-```julia
-plot(wp, x=:L2, y=:chi2_interp, yguide="Chi-squared (dense)", color=colors)
-plot_chisq_interval!(4*100)
-```
-
 
 ## Fixed steps - no smoothing
 

diff --git a/benchmarks/lotkavolterra.jmd b/benchmarks/lotkavolterra.jmd
@@ -258,12 +258,6 @@ end
 plot_chisq_interval!(2)
 ```
 
-Interpolation:
-```julia
-plot(wp, x=:L2, y=:chi2_interp, color=[1 1 1 1 2 2 2 2], yguide="Chi-squared (dense)")
-plot_chisq_interval!(2*100)
-```
-
 ## Comparison of the different diffusion models
 
 ### EK0

diff --git a/benchmarks/vanderpol.jmd b/benchmarks/vanderpol.jmd
@@ -123,12 +123,6 @@ end
 plot_chisq_interval!(2)
 ```
 
-```julia
-plot(wp, x=:L2, y=:chi2_interp, yguide="Chi-squared (dense)",
-     palette=Plots.palette([:blue, :red], length(_setups)))
-plot_chisq_interval!(2*100)
-```
-
 ## Comparison of the different initialization schemes
 
 ```julia
@@ -269,11 +263,6 @@ plot(wp; x=:final, y=:chi2_final, yguide="Chi-squared (final)", color)
 plot_chisq_interval!(2)
 ```
 
-```julia
-plot(wp; x=:L2, y=:chi2_interp, yguide="Chi-squared (dense)", color)
-plot_chisq_interval!(2*100)
-```
-
 
 ## Appendix
 

diff --git a/docs/src/benchmarks/figures/hodgkinhuxley_2_1.svg b/docs/src/benchmarks/figures/hodgkinhuxley_2_1.svg
diff --git a/docs/src/benchmarks/figures/hodgkinhuxley_3_1.svg b/docs/src/benchmarks/figures/hodgkinhuxley_3_1.svg
diff --git a/docs/src/benchmarks/figures/hodgkinhuxley_4_1.svg b/docs/src/benchmarks/figures/hodgkinhuxley_4_1.svg
diff --git a/docs/src/benchmarks/figures/hodgkinhuxley_5_1.svg b/docs/src/benchmarks/figures/hodgkinhuxley_5_1.svg
diff --git a/docs/src/benchmarks/figures/hodgkinhuxley_6_1.svg b/docs/src/benchmarks/figures/hodgkinhuxley_6_1.svg
diff --git a/docs/src/benchmarks/figures/hodgkinhuxley_7_1.svg b/docs/src/benchmarks/figures/hodgkinhuxley_7_1.svg
diff --git a/docs/src/benchmarks/figures/hodgkinhuxley_8_1.svg b/docs/src/benchmarks/figures/hodgkinhuxley_8_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_10_1.svg b/docs/src/benchmarks/figures/lotkavolterra_10_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_11_1.svg b/docs/src/benchmarks/figures/lotkavolterra_11_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_12_1.svg b/docs/src/benchmarks/figures/lotkavolterra_12_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_13_1.svg b/docs/src/benchmarks/figures/lotkavolterra_13_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_14_1.svg b/docs/src/benchmarks/figures/lotkavolterra_14_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_15_1.svg b/docs/src/benchmarks/figures/lotkavolterra_15_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_16_1.svg b/docs/src/benchmarks/figures/lotkavolterra_16_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_2_1.svg b/docs/src/benchmarks/figures/lotkavolterra_2_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_3_1.svg b/docs/src/benchmarks/figures/lotkavolterra_3_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_4_1.svg b/docs/src/benchmarks/figures/lotkavolterra_4_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_5_1.svg b/docs/src/benchmarks/figures/lotkavolterra_5_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_6_1.svg b/docs/src/benchmarks/figures/lotkavolterra_6_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_7_1.svg b/docs/src/benchmarks/figures/lotkavolterra_7_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_8_1.svg b/docs/src/benchmarks/figures/lotkavolterra_8_1.svg
diff --git a/docs/src/benchmarks/figures/lotkavolterra_9_1.svg b/docs/src/benchmarks/figures/lotkavolterra_9_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_10_1.svg b/docs/src/benchmarks/figures/vanderpol_10_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_11_1.svg b/docs/src/benchmarks/figures/vanderpol_11_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_12_1.svg b/docs/src/benchmarks/figures/vanderpol_12_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_2_1.svg b/docs/src/benchmarks/figures/vanderpol_2_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_3_1.svg b/docs/src/benchmarks/figures/vanderpol_3_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_4_1.svg b/docs/src/benchmarks/figures/vanderpol_4_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_5_1.svg b/docs/src/benchmarks/figures/vanderpol_5_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_6_1.svg b/docs/src/benchmarks/figures/vanderpol_6_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_7_1.svg b/docs/src/benchmarks/figures/vanderpol_7_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_8_1.svg b/docs/src/benchmarks/figures/vanderpol_8_1.svg
diff --git a/docs/src/benchmarks/figures/vanderpol_9_1.svg b/docs/src/benchmarks/figures/vanderpol_9_1.svg
diff --git a/docs/src/benchmarks/hodgkinhuxley.md b/docs/src/benchmarks/hodgkinhuxley.md
@@ -189,13 +189,6 @@ plot_chisq_interval!(4)
 
 ![](figures/hodgkinhuxley_6_1.svg)
 
-```julia
-plot(wp, x=:L2, y=:chi2_interp, yguide="Chi-squared (dense)", color=colors)
-plot_chisq_interval!(4*100)
-```
-
-![](figures/hodgkinhuxley_7_1.svg)
-
 
 
 
@@ -232,7 +225,7 @@ wp = WorkPrecisionSet(
 plot(wp, title="Fixed steps - no smoothing", color=colors)
 ```
 
-![](figures/hodgkinhuxley_8_1.svg)
+![](figures/hodgkinhuxley_7_1.svg)
 
 
 
@@ -270,7 +263,7 @@ wp = WorkPrecisionSet(
 plot(wp, title="Fixed steps - with smoothing", color=colors)
 ```
 
-![](figures/hodgkinhuxley_9_1.svg)
+![](figures/hodgkinhuxley_8_1.svg)
 
 
 

diff --git a/docs/src/benchmarks/lotkavolterra.md b/docs/src/benchmarks/lotkavolterra.md
@@ -301,16 +301,6 @@ plot_chisq_interval!(2)
 
 
 
-Interpolation:
-```julia
-plot(wp, x=:L2, y=:chi2_interp, color=[1 1 1 1 2 2 2 2], yguide="Chi-squared (dense)")
-plot_chisq_interval!(2*100)
-```
-
-![](figures/lotkavolterra_12_1.svg)
-
-
-
 ## Comparison of the different diffusion models
 
 ### EK0
@@ -348,7 +338,7 @@ wp = WorkPrecisionSet(
 plot(wp, color=[2 2 3 3 4 4 5 5])
 ```
 
-![](figures/lotkavolterra_13_1.svg)
+![](figures/lotkavolterra_12_1.svg)
 
 
 
@@ -358,7 +348,7 @@ plot(wp, x=:final, y=:chi2_final, color=[2 2 3 3 4 4 5 5], yguide="Chi-squared (
 plot_chisq_interval!(2)
 ```
 
-![](figures/lotkavolterra_14_1.svg)
+![](figures/lotkavolterra_13_1.svg)
 
 
 
@@ -393,7 +383,7 @@ wp = WorkPrecisionSet(
 plot(wp, color=[2 2 3 3])
 ```
 
-![](figures/lotkavolterra_15_1.svg)
+![](figures/lotkavolterra_14_1.svg)
 
 
 
@@ -403,7 +393,7 @@ plot(wp, x=:final, y=:chi2_final, color=[2 2 3 3], yguide="Chi-squared (final)")
 plot_chisq_interval!(2)
 ```
 
-![](figures/lotkavolterra_16_1.svg)
+![](figures/lotkavolterra_15_1.svg)
 
 
 
@@ -449,7 +439,7 @@ plot(
 )
 ```
 
-![](figures/lotkavolterra_17_1.svg)
+![](figures/lotkavolterra_16_1.svg)
 
 
 

diff --git a/docs/src/benchmarks/vanderpol.md b/docs/src/benchmarks/vanderpol.md
@@ -144,14 +144,6 @@ plot_chisq_interval!(2)
 
 ![](figures/vanderpol_6_1.svg)
 
-```julia
-plot(wp, x=:L2, y=:chi2_interp, yguide="Chi-squared (dense)",
-     palette=Plots.palette([:blue, :red], length(_setups)))
-plot_chisq_interval!(2*100)
-```
-
-![](figures/vanderpol_7_1.svg)
-
 
 
 ## Comparison of the different initialization schemes
@@ -197,7 +189,7 @@ plot(
 )
 ```
 
-![](figures/vanderpol_8_1.svg)
+![](figures/vanderpol_7_1.svg)
 
 ```julia
 DENSE = false;
@@ -233,7 +225,7 @@ wp = WorkPrecisionSet(
 plot(wp, palette=Plots.palette([:blue, :red], length(_setups)), xticks = 10.0 .^ (-16:1:5))
 ```
 
-![](figures/vanderpol_9_1.svg)
+![](figures/vanderpol_8_1.svg)
 
 
 
@@ -254,7 +246,7 @@ test_sol2 = solve(prob2, RadauIIA5(), abstol=1/10^14, reltol=1/10^14)
 plot(test_sol2, title="Van der Pol Solution (2nd order)", legend=false, ylims=(-5, 5), xticks=:auto)
 ```
 
-![](figures/vanderpol_10_1.svg)
+![](figures/vanderpol_9_1.svg)
 
 ```julia
 DENSE = true;
@@ -291,13 +283,13 @@ color = [1 1 1 1 2 2 2 2]
 plot(wp; x=:final, color)
 ```
 
-![](figures/vanderpol_11_1.svg)
+![](figures/vanderpol_10_1.svg)
 
 ```julia
 plot(wp; x=:L2, color)
 ```
 
-![](figures/vanderpol_12_1.svg)
+![](figures/vanderpol_11_1.svg)
 
 
 
@@ -308,14 +300,7 @@ plot(wp; x=:final, y=:chi2_final, yguide="Chi-squared (final)", color)
 plot_chisq_interval!(2)
 ```
 
-![](figures/vanderpol_13_1.svg)
-
-```julia
-plot(wp; x=:L2, y=:chi2_interp, yguide="Chi-squared (dense)", color)
-plot_chisq_interval!(2*100)
-```
-
-![](figures/vanderpol_14_1.svg)
+![](figures/vanderpol_12_1.svg)