fetchNASIS: update QC messages by adding to soilDB.env as needed for … #1349
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on: | |
push: | |
branches: | |
- main | |
- master | |
pull_request: | |
branches: | |
- main | |
- master | |
schedule: | |
- cron: '0 0 * * 6' # At 00:00 on Saturday | |
workflow_dispatch: | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: windows-latest, r: 'release'} | |
- {os: macOS-latest, r: 'release'} | |
- {os: ubuntu-22.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"} | |
- {os: ubuntu-22.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"} | |
- {os: ubuntu-20.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
env: | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Get branch name (push) | |
if: github.event_name != 'pull_request' | |
shell: bash | |
run: echo "BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/} | tr / -)" >> $GITHUB_ENV | |
- name: Get branch name (pull request) | |
if: github.event_name == 'pull_request' | |
shell: bash | |
run: echo "BRANCH_NAME=$(echo ${GITHUB_HEAD_REF} | tr / -)" >> $GITHUB_ENV | |
- name: Configure git | |
if: runner.os == 'Windows' && (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
run: | | |
git config user.email "github-actions@github.com" | |
git config user.name "github-actions" | |
git pull --no-rebase origin ${{ env.BRANCH_NAME }} | |
echo ${{ env.BRANCH_NAME }} | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: any::rcmdcheck, any::remotes, terra=?ignore-before-r=4.1.0, knitr=?ignore-before-r=4.0.0, rmarkdown=?ignore-before-r=4.0.0, testthat=?ignore-before-r=4.0.0, local::., brownag/soilDBdata | |
# upgrade: 'TRUE' ## NB: required to force building of source packages | |
needs: check | |
- name: Install aqp off GitHub (devel and 3.6 only) | |
if: matrix.config.r == 'devel' || matrix.config.r == '3.6' | |
run: | | |
remotes::install_github("ncss-tech/aqp", dependencies = TRUE, build = FALSE) | |
shell: Rscript {0} | |
- name: Install terra off r-universe (devel only) | |
if: matrix.config.r == 'devel' #|| runner.os == 'Windows' | |
run: install.packages('terra', repos = 'https://rspatial.r-universe.dev') | |
shell: Rscript {0} | |
- uses: r-lib/actions/check-r-package@v2 | |
with: | |
upload-snapshots: true | |
- name: Render README | |
if: runner.os == 'Windows' && (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
run: | | |
install.packages(c("rmarkdown","devtools","pkgdown","aqp")) | |
remotes::install_github(c("ncss-tech/aqp"), dependencies = FALSE) | |
rmarkdown::render("README.Rmd") | |
shell: Rscript {0} | |
- name: Commit and push results | |
if: runner.os == 'Windows' && (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
run: | | |
git add README.md | |
git commit -m 'Render README.Rmd' || echo "No changes to commit" | |
git add inst/\* | |
git commit -m 'Update inst' || echo "No changes to commit" | |
git push origin HEAD:${{ env.BRANCH_NAME }} |