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Merge pull request #1119 from neicnordic/feature/api-list-datasets
[API] list datasets
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
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@@ -1769,3 +1769,175 @@ func (suite *TestSuite) TestDeprecateC4ghHash_wrongHash() { | |
| assert.Equal(suite.T(), http.StatusBadRequest, resp.StatusCode) | ||
| defer resp.Body.Close() | ||
| } | ||
|
|
||
| func (suite *TestSuite) TestListDatasets() { | ||
| for i := 0; i < 5; i++ { | ||
| fileID, err := Conf.API.DB.RegisterFile(fmt.Sprintf("/dummy/TestGetUserFiles-00%d.c4gh", i), "dummy") | ||
| if err != nil { | ||
| suite.FailNow("failed to register file in database") | ||
| } | ||
|
|
||
| stableID := fmt.Sprintf("accession_%s_0%d", "dummy", i) | ||
| err = Conf.API.DB.SetAccessionID(stableID, fileID) | ||
| if err != nil { | ||
| suite.FailNowf("got (%s) when setting stable ID: %s, %s", err.Error(), stableID, fileID) | ||
| } | ||
| } | ||
|
|
||
| err = Conf.API.DB.MapFilesToDataset("API:dataset-01", []string{"accession_dummy_00", "accession_dummy_01", "accession_dummy_02"}) | ||
| if err != nil { | ||
| suite.FailNow("failed to map files to dataset") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-01", "registered", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
|
|
||
| err = Conf.API.DB.MapFilesToDataset("API:dataset-02", []string{"accession_dummy_03", "accession_dummy_04"}) | ||
| if err != nil { | ||
| suite.FailNow("failed to map files to dataset") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-02", "registered", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-02", "released", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
|
|
||
| gin.SetMode(gin.ReleaseMode) | ||
| assert.NoError(suite.T(), setupJwtAuth()) | ||
|
|
||
| // Mock request and response holders | ||
| w := httptest.NewRecorder() | ||
| r := httptest.NewRequest(http.MethodGet, "/datasets/list", http.NoBody) | ||
| r.Header.Add("Authorization", "Bearer "+suite.Token) | ||
|
|
||
| _, router := gin.CreateTestContext(w) | ||
| router.GET("/datasets/list", listAllDatasets) | ||
| router.GET("/dataset/list", listAllDatasets) | ||
|
|
||
| router.ServeHTTP(w, r) | ||
| okResponse := w.Result() | ||
| defer okResponse.Body.Close() | ||
| assert.Equal(suite.T(), http.StatusOK, okResponse.StatusCode) | ||
|
|
||
| datasets := []database.DatasetInfo{} | ||
| err = json.NewDecoder(okResponse.Body).Decode(&datasets) | ||
| assert.NoError(suite.T(), err, "failed to list datasets from DB") | ||
| assert.Equal(suite.T(), 2, len(datasets)) | ||
| assert.Equal(suite.T(), "released", datasets[1].Status) | ||
| assert.Equal(suite.T(), "API:dataset-01|registered", fmt.Sprintf("%s|%s", datasets[0].DatasetID, datasets[0].Status)) | ||
| } | ||
|
|
||
| func (suite *TestSuite) TestListUserDatasets() { | ||
| for i := 0; i < 5; i++ { | ||
| fileID, err := Conf.API.DB.RegisterFile(fmt.Sprintf("/user_example.org/TestGetUserFiles-00%d.c4gh", i), strings.ReplaceAll("user_example.org", "_", "@")) | ||
| if err != nil { | ||
| suite.FailNow("failed to register file in database") | ||
| } | ||
|
|
||
| stableID := fmt.Sprintf("accession_%s_0%d", "user_example.org", i) | ||
| err = Conf.API.DB.SetAccessionID(stableID, fileID) | ||
| if err != nil { | ||
| suite.FailNowf("got (%s) when setting stable ID: %s, %s", err.Error(), stableID, fileID) | ||
| } | ||
| } | ||
|
|
||
| err = Conf.API.DB.MapFilesToDataset("API:dataset-01", []string{"accession_user_example.org_00", "accession_user_example.org_01", "accession_user_example.org_02"}) | ||
| if err != nil { | ||
| suite.FailNow("failed to map files to dataset") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-01", "registered", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
|
|
||
| err = Conf.API.DB.MapFilesToDataset("API:dataset-02", []string{"accession_user_example.org_03", "accession_user_example.org_04"}) | ||
| if err != nil { | ||
| suite.FailNow("failed to map files to dataset") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-02", "registered", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-02", "released", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
|
|
||
| gin.SetMode(gin.ReleaseMode) | ||
| assert.NoError(suite.T(), setupJwtAuth()) | ||
|
|
||
| // Mock request and response holders | ||
| w := httptest.NewRecorder() | ||
| r := httptest.NewRequest(http.MethodGet, "/datasets/list/[email protected]", http.NoBody) | ||
| r.Header.Add("Authorization", "Bearer "+suite.Token) | ||
|
|
||
| _, router := gin.CreateTestContext(w) | ||
| router.GET("/datasets/list/:username", listUserDatasets) | ||
|
|
||
| router.ServeHTTP(w, r) | ||
| okResponse := w.Result() | ||
| defer okResponse.Body.Close() | ||
| assert.Equal(suite.T(), http.StatusOK, okResponse.StatusCode) | ||
|
|
||
| datasets := []database.DatasetInfo{} | ||
| err = json.NewDecoder(okResponse.Body).Decode(&datasets) | ||
| assert.NoError(suite.T(), err, "failed to list datasets from DB") | ||
| assert.Equal(suite.T(), 2, len(datasets)) | ||
| assert.Equal(suite.T(), "released", datasets[1].Status) | ||
| assert.Equal(suite.T(), "API:dataset-01|registered", fmt.Sprintf("%s|%s", datasets[0].DatasetID, datasets[0].Status)) | ||
| } | ||
|
|
||
| func (suite *TestSuite) TestListDatasetsAsUser() { | ||
| for i := 0; i < 5; i++ { | ||
| fileID, err := Conf.API.DB.RegisterFile(fmt.Sprintf("/user_example.org/TestGetUserFiles-00%d.c4gh", i), suite.User) | ||
| if err != nil { | ||
| suite.FailNow("failed to register file in database") | ||
| } | ||
|
|
||
| stableID := fmt.Sprintf("accession_user_example.org_0%d", i) | ||
| err = Conf.API.DB.SetAccessionID(stableID, fileID) | ||
| if err != nil { | ||
| suite.FailNowf("got (%s) when setting stable ID: %s, %s", err.Error(), stableID, fileID) | ||
| } | ||
| } | ||
|
|
||
| err = Conf.API.DB.MapFilesToDataset("API:dataset-01", []string{"accession_user_example.org_00", "accession_user_example.org_01", "accession_user_example.org_02"}) | ||
| if err != nil { | ||
| suite.FailNow("failed to map files to dataset") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-01", "registered", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
|
|
||
| err = Conf.API.DB.MapFilesToDataset("API:dataset-02", []string{"accession_user_example.org_03", "accession_user_example.org_04"}) | ||
| if err != nil { | ||
| suite.FailNow("failed to map files to dataset") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-02", "registered", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
| if err := Conf.API.DB.UpdateDatasetEvent("API:dataset-02", "released", "{}"); err != nil { | ||
| suite.FailNow("failed to update dataset event") | ||
| } | ||
|
|
||
| gin.SetMode(gin.ReleaseMode) | ||
| assert.NoError(suite.T(), setupJwtAuth()) | ||
|
|
||
| // Mock request and response holders | ||
| w := httptest.NewRecorder() | ||
| r := httptest.NewRequest(http.MethodGet, "/datasets", http.NoBody) | ||
| r.Header.Add("Authorization", "Bearer "+suite.Token) | ||
|
|
||
| _, router := gin.CreateTestContext(w) | ||
| router.GET("/datasets", listDatasets) | ||
|
|
||
| router.ServeHTTP(w, r) | ||
| okResponse := w.Result() | ||
| defer okResponse.Body.Close() | ||
| assert.Equal(suite.T(), http.StatusOK, okResponse.StatusCode) | ||
|
|
||
| datasets := []database.DatasetInfo{} | ||
| err = json.NewDecoder(okResponse.Body).Decode(&datasets) | ||
| assert.NoError(suite.T(), err, "failed to list datasets from DB") | ||
| assert.Equal(suite.T(), 2, len(datasets)) | ||
| assert.Equal(suite.T(), "released", datasets[1].Status) | ||
| assert.Equal(suite.T(), "API:dataset-01|registered", fmt.Sprintf("%s|%s", datasets[0].DatasetID, datasets[0].Status)) | ||
| } | ||
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