Debugging RXD failure

.github/workflows/build-neuron.yml

@@ -21,55 +21,12 @@ defaults:
     shell: bash
 
 jobs:
-  # This allows us to dynamically vary the number of branches we run on on
-  # different days.
-  provide_version_matrix:
-    runs-on: ubuntu-latest
-    steps:
-    - name: check Azure drop url exists -> ${{ github.event.inputs.azure_drop_url }}
-      if: github.event_name == 'workflow_dispatch' && github.event.inputs.azure_drop_url
-      run: |
-        curl -sfSI -X GET '${{ github.event.inputs.azure_drop_url }}'
-    - name: Get latest release information
-      id: get_latest_release
-      uses: joutvhu/get-release@v1
-      env:
-        GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
-      with:
-        debug: true
-        latest: true
-        prerelease: true
-        repo: "nrn"
-    - name: Construct matrix of branch/tag names and wheel versions to test
-      id: provide_versions
-      run: |
-        if [[ '${{github.event.inputs.neuron_branch}}' == "" ]]
-        then
-          # If we're not told to test a specific branch, test the default branch with neuron-nightly wheels
-          values="{\"branch_or_tag\": \"\", \"default_wheel\": \"neuron-nightly\"}"
-          if [[ $(date +%u) == 1 ]] || [[ ${{ github.event_name }} == 'pull_request' ]] || [[ ${{ github.event_name }} == 'push' ]]
-          then
-            # If it's a Monday, test the latest release (and latest released wheels) in addition
-            # Also test it on any PR, and any push to a PR
-            tag_name="${{steps.get_latest_release.outputs.tag_name}}"
-            values="${values}, {\"branch_or_tag\": \"${tag_name}\", \"default_wheel\": \"neuron==${tag_name}\"}"
-          fi
-          echo "matrix=[${values}]" >> $GITHUB_OUTPUT
-        else
-          # Test the given branch with no wheels by default. If an Azure URL is given, those wheels will be used.
-          echo "matrix=[{\"branch_or_tag\": \"${{github.event.inputs.neuron_branch}}\", \"default_wheel\": \"\"}]" >> $GITHUB_OUTPUT
-        fi
-    outputs:
-      matrix: ${{ steps.provide_versions.outputs.matrix }}
-
   ci:
     timeout-minutes: 45
-    needs: provide_version_matrix
     runs-on: ${{ matrix.os.vm }}
     container: ${{ matrix.os.container }}
-    name: ${{matrix.os.container || matrix.os.vm}} ${{matrix.branch_or_tag_and_default_wheel.branch_or_tag}} ${{matrix.branch_or_tag_and_default_wheel.default_wheel}}
+    name: "blabla"
     env:
-      SDK_ROOT: $(xcrun --sdk macosx --show-sdk-path)
       OS_FLAVOUR: ${{matrix.os.flavour}}
       UNPRIVILEGED_USER: runner # User created+used inside Docker containers
       # Extra software collections to be installed and enabled on CentOS7
@@ -78,27 +35,8 @@ jobs:
     strategy:
       matrix:
         os:
-        # GitHub Actions MacOS 13 runner
-        - { vm: macos-13, flavour: macOS }
-        # GitHub Actions MacOS 12 runner
-        - { vm: macos-12, flavour: macOS }
-        # Alma Linux 8 Docker image
-        - { vm: ubuntu-latest, container: "almalinux:8.10", flavour: redhat }
-        # CentOS Stream 9 Docker image
-        - { vm: ubuntu-latest, container: "quay.io/centos/centos:stream9", flavour: redhat }
-        # Fedora 37 Docker image
-        - { vm: ubuntu-latest, container: "fedora:37", flavour: redhat }
-        # Fedora Latest (38, at time of writing) Docker image
-        - { vm: ubuntu-latest, container: "fedora:latest", flavour: redhat }
-        # Ubuntu 20.04 Docker image
-        - { vm: ubuntu-latest, container: "ubuntu:20.04", flavour: debian }
         # Ubuntu Latest (22.04, at time of writing) Docker image
         - { vm: ubuntu-latest, container: "ubuntu:latest", flavour: debian }
-        # Debian Bullseye (11) Docker image
-        - { vm: ubuntu-latest, container: "debian:bullseye", flavour: debian }
-        # At the time of writing, Debian Bookworm (12) Docker image
-        - { vm: ubuntu-latest, container: "debian:stable", flavour: debian }
-        branch_or_tag_and_default_wheel: ${{ fromJson(needs.provide_version_matrix.outputs.matrix) }}
       fail-fast: false
 
     steps:
@@ -139,46 +77,7 @@ jobs:
           git clone --depth=1 --single-branch ${BRANCH_OPT} ${{github.server_url}}/${{github.repository_owner}}/nrn
           # Init submodules for testing purposes
           cd nrn && git submodule update --init --recursive
-
-      # When we run in Ubuntu/Fedora/Debian containers from Docker Hub then we
-      # are root. This is different from when we use the GitHub Actions images
-      # directly, and leads to errors from MPI later. If we run inside Docker,
-      # create a regular user to run as.
-      - name: Setup unprivileged user
-        # If we run in a native GitHub Actions container, without Docker, this
-        # isn't needed
-        if: matrix.os.container
-        run: |
-          useradd --create-home ${UNPRIVILEGED_USER}
-          chown -R ${UNPRIVILEGED_USER}:${UNPRIVILEGED_USER} ${GITHUB_WORKSPACE}
-
-      # Put all the remaining steps in one job that runs as an unprivileged user
-      - name: Build and test NEURON
-        working-directory: ${{github.workspace}}/nrn
-        run: ../wrappers/runUnprivileged.sh ../scripts/buildNeuron.sh
-        env:
-          INSTALL_DIR : ${{github.workspace}}/nrn/install
-
-      # Download specific wheels from Azure via workflow dispatch
-      - name: Download Azure drop (artifacts) -> ${{ github.event.inputs.azure_drop_url }}
-        if: github.event.inputs.azure_drop_url
-        working-directory: ${{github.workspace}}
-        run: ./scripts/getAzureDrop.sh '${{ github.event.inputs.azure_drop_url }}'
-
-      # Test the wheels. If an Azure URL was given, those wheels are used. Otherwise:
-      # - default branch (master): neuron-nightly
-      # - latest release (tag X.Y): neuron==X.Y
-      # - feature branch: wheels only tested if a URL is given
-      - name: Test (nightly) NEURON wheel
-        if: github.event.inputs.azure_drop_url || matrix.branch_or_tag_and_default_wheel.default_wheel
-        working-directory: ${{github.workspace}}/nrn
-        run: ../wrappers/runUnprivileged.sh ../scripts/testNeuronWheel.sh
-        env:
-          NRN_PACKAGE: ${{matrix.branch_or_tag_and_default_wheel.default_wheel}}
-          NEURON_BRANCH_OR_TAG: ${{matrix.branch_or_tag}}
-
-      # This step will set up an SSH connection on tmate.io for live debugging
-      # of non-Docker runs that failed.
-      - name: live debug session on failure
-        if: failure() && !matrix.os.container
-        uses: mxschmitt/action-tmate@v3
+          python3 -m venv env
+          source env/bin/activate
+          env/bin/python -m pip install neuron-nightly pytest
+          env/bin/python -m pytest -k test_multi_gridding_mix test/

scripts/buildNeuron.sh

@@ -80,4 +80,4 @@ echo "------- Install NEURON -------"
 cmake --build . -- install
 
 echo "------- Run test suite -------"
-ctest -VV -j ${PARALLEL_JOBS}
+ctest -VV -j ${PARALLEL_JOBS} -R 'rxdmod_tests::rxd_tests'