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Optimize GCLDAModel with numba and Parallel #744

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Optimize GCLDAModel with numba and Parallel #744

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Commits on Aug 24, 2022

  1. Use numba in for loop of _update_word_topic_assignments and _update_p… 

    …eak_assignments
    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  2. Convert staticmethod to function

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  3. Disable numba execution to allow pytest-cov to detect coverage in fun… 

    …ctions with @jit
    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  4. DISABLE_JIT=True only for GCLDA tests

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  5. DISABLE_JIT=True inside GCLDA tests

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  6. DISABLE_JIT=False after GCLDA tests

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  7. Fix comments

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  8. Disable JIT using environment variable

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  9. Lint issue

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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  10. Try using config.DISABLE_JIT again

    @JulioAPeraza
    JulioAPeraza committed Aug 24, 2022
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Commits on Aug 25, 2022

  1. Set nopython mode to False

    @JulioAPeraza
    JulioAPeraza committed Aug 25, 2022
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Commits on Aug 30, 2022

  1. Remove truncation of probs_pdf

    @JulioAPeraza
    JulioAPeraza committed Aug 30, 2022
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Commits on Sep 3, 2022

  1. Use Parallel in _update_peak_assignments

    @JulioAPeraza
    JulioAPeraza committed Sep 3, 2022
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Commits on Sep 24, 2022

  1. Speed parallelization by avoiding excessive .copy() across jobs

    @JulioAPeraza
    JulioAPeraza committed Sep 24, 2022
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Commits on Oct 3, 2022

  1. Create chunks of data to speed up Parallel

    @JulioAPeraza
    JulioAPeraza committed Oct 3, 2022
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Commits on Oct 10, 2022

  1. Clean up the code

    @JulioAPeraza
    JulioAPeraza committed Oct 10, 2022
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Commits on Oct 11, 2022

  1. Use an array of seeds for multi-core reproducibility of default_rng()… 

    … instance
    @JulioAPeraza
    JulioAPeraza committed Oct 11, 2022
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  2. Update gclda.py

    @JulioAPeraza
    JulioAPeraza committed Oct 11, 2022
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Commits on Oct 24, 2022

  1. Parallelize _update_word_topic_assignments()

    @JulioAPeraza
    JulioAPeraza committed Oct 24, 2022
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