add dead time correction #162
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| tests: | |
| runs-on: self-hosted | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| channels: conda-forge,defaults,mantid | |
| auto-update-conda: true | |
| miniforge-version: latest | |
| python-version: "3.8" | |
| environment-file: environment.yml | |
| activate-environment: liquid-ref | |
| - name: Restore cached conda environment | |
| id: cache-load | |
| uses: actions/cache/restore@v3 | |
| with: | |
| path: /usr/share/miniconda/envs/liquid-ref | |
| key: ${{ runner.os }}-conda-${{ hashFiles('environment.yml') }} | |
| - name: Load Environment | |
| if: steps.cache-load.outputs.cache-hit != 'true' | |
| run: | | |
| mamba env update --file environment.yml --prune | |
| - name: Start xvfb daemon | |
| run: | | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -ac -screen 0 1280x1024x16 | |
| - name: Test with pytest | |
| working-directory: ./reduction | |
| run: | | |
| echo datasearch.directories=/home/cloud/_work/LiquidsReflectometer/LiquidsReflectometer/reduction/tests/data/liquidsreflectometer-data/nexus/ >> ~/.mantid/Mantid.user.properties | |
| cat ~/.mantid/Mantid.user.properties | |
| git submodule add --force https://code.ornl.gov/sns-hfir-scse/infrastructure/test-data/liquidsreflectometer-data.git tests/data/liquidsreflectometer-data | |
| git submodule update --init | |
| python -m pytest --cov=. --cov-report=xml --cov-report=term test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |