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amptk v1.0.0
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@nextgenusfs nextgenusfs released this 14 Sep 21:04
· 195 commits to master since this release
1.0.0
42f3b67
  • now requires edlib v1.2.1 -> thanks to Edlib developer (Martin Šošić) for finding the bug that was preventing full usage of edlib in amptk. primer and barcode searches now very fast.
  • added a new phyloseq module, amptk stats which will run some preliminary community ecology stats on your BIOM output file. requires R and phyloseq
  • added support for UNOSIE3 via the amptk unoise3 command, note you will need to have USEARCHv10 for this script to work.
  • updated global alignment taxonomy search to better deal with multiple hits in the reference database
  • updated ITS reference database as well as COI database.
  • finally wrote some more comprehensive documents, located at http://amptk.readthedocs.io
  • several minor bug fixes
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