You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
This is my first time using funannotate tool. Installing it on HPC.
I downloaded a SIF image (v.1.8.17) from https://depot.galaxyproject.org/singularity/
Next, tried to install databases: singularity run $SIF_DIR funannotate setup -d $DATABASEOUT
getting an error:
Traceback (most recent call last):
File "/opt/conda/bin/funannotate", line 10, in <module>
sys.exit(main())
File "/opt/conda/lib/python3.9/site-packages/funannotate/funannotate.py", line 715, in main
mod = importlib.import_module(
File "/opt/conda/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/opt/conda/lib/python3.9/site-packages/funannotate/setupDB.py", line 21, in <module>
import funannotate.library as lib
File "/opt/conda/lib/python3.9/site-packages/funannotate/library.py", line 17, in <module>
import distro
ModuleNotFoundError: No module named 'distro'
tried container from another provider of the same version and got the same error.
If I call for the help page it works fine.
Any help would be appreciated.
Thanks
The text was updated successfully, but these errors were encountered:
Hi,
This is my first time using funannotate tool. Installing it on HPC.
I downloaded a SIF image (v.1.8.17) from https://depot.galaxyproject.org/singularity/
Next, tried to install databases:
singularity run $SIF_DIR funannotate setup -d $DATABASEOUT
getting an error:
tried container from another provider of the same version and got the same error.
If I call for the help page it works fine.
Any help would be appreciated.
Thanks
The text was updated successfully, but these errors were encountered: