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funannotate predict clarity on --species parameter #1085

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IrinaVKuznetsova opened this issue Dec 11, 2024 · 0 comments
Open

funannotate predict clarity on --species parameter #1085

IrinaVKuznetsova opened this issue Dec 11, 2024 · 0 comments

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@IrinaVKuznetsova
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Dear funannotate team,

I would like to clarify what values should be used for the --species parameter in funannotate predict command. Specifically, should this parameter be a simple string of the species name, or does it need to be the exact taxonomy name? and if exact taxonomy name then from what database?

-s, --species Species name, use quotes for binomial, e.g. "Aspergillus fumigatus"`

in another example you have it as a "Genome awesomenous", which makes me think it can be a simple string of any content
Your guidance on this matter would be greatly appreciated.
Thanks

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