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funannotate update stops #1086

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mgarl-10 opened this issue Dec 11, 2024 · 0 comments
Open

funannotate update stops #1086

mgarl-10 opened this issue Dec 11, 2024 · 0 comments

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@mgarl-10
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Hello,

I am running funannotate on an insect genome and the program crashes at the funannotate update stage.
When I look at the log file it stops here:
Running PASA annotation comparison step 1

The file pasa.annotation_compare.96711.out found in pasa_run.log.dir is 1.3 Gb.
I ran it multiple times now and it always crashes at that stage. I thought that it could be because the size of my RNAseq data files is quite big (~13 Gb) so I tried to downsize it to randomly select 10% of the reads but it still keeps crashing.

How could I solve this?
Thank you

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