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Ingest: Fix date annotations #63

Merged
merged 2 commits into from
Feb 2, 2025
Merged

Ingest: Fix date annotations #63

merged 2 commits into from
Feb 2, 2025

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j23414
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@j23414 j23414 commented Jan 28, 2025

Description of proposed changes

This manually annotates some of the dates on the lineage 1a and lineage2 strains, which makes it more likely to infer a more accurate timetree and potential tree rooting.

# 1. Pull branch
git clone https://github.com/nextstrain/WNV.git fix-annotations
cd fix-annotations
git checkout fix-annotations

# 2. Check current metadata
nextstrain build ingest
grep "DQ116961" ingest/results/metadata.tsv

# 3. Add date
# edit ingest/defaults/annotations.tsv

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@j23414 j23414 marked this pull request as ready for review February 1, 2025 00:21
@j23414 j23414 merged commit 9a49047 into main Feb 2, 2025
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j23414 commented Feb 2, 2025

Merged without review since this is just cleaning up some annotations. But feel free to post comment or corrections post-merge.

@j23414 j23414 deleted the fix-annotations branch February 5, 2025 00:49
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