Code

Update RKI data processing#476

Code

Merged

j23414 merged 5 commits intomasternextstrain/ncov-ingest:masterfrom 475-automated-genbank-ingest-failingnextstrain/ncov-ingest:475-automated-genbank-ingest-failingCopy head branch name to clipboardSep 13, 2024

+16-8

Commits

Commits on Sep 12, 2024

• Update RKI_INDEX_COL since SEQUENCE.ID renamed to igs_id

  j23414

  committed
  a587f18

  Copy full SHA for a587f18

• Update COLUMN_MAP for RKI data

  Show description for f86c4fa
  j23414

  committed
  f86c4fa

  Copy full SHA for f86c4fa

• Add new RKI date format %Y-%m-%dT%H:%M:%S to expected date_formats

  j23414

  committed
  2df0af9

  Copy full SHA for 2df0af9

• Parse new RKI JSON blob for pango_lineage

  Show description for 7767c76
  j23414

  committed
  7767c76

  Copy full SHA for 7767c76

Commits on Sep 13, 2024

• fixup: Parse new RKI JSON blob for pango_lineage

  j23414

  committed
  e57f3c0

  Copy full SHA for e57f3c0