Skip to content

Issues: nf-core/chipseq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

14 Open 174 Closed
14 Open 174 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Process NFCORE_CHIPSEQ:PREPARE_GENOME:GFFREAD declares 2 input channels but 1 were specified bug Something isn't working
#432 opened Nov 19, 2024 by ftabaro
Process NFCORE_CHIPSEQ:CHIPSEQ:FASTQ_ALIGN_BWA:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (SRR5627136_REP2_T1) terminated with an error exit status (1) bug Something isn't working
#431 opened Oct 22, 2024 by NicoleChant
Process NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC terminated with an error exit status bug Something isn't working
#428 opened Oct 17, 2024 by Sungryong-Oh
Not a valid path value when provide genome by fasta and gtf in compressed gz format, and not providing genome index or gene bed bug Something isn't working
#427 opened Oct 16, 2024 by ljw20180420
1
Refactor local modules to use an conda environment yml file and not ping modules directly enhancement
#417 opened Oct 1, 2024 by JoseEspinosa 2.2
Move the KHMER_UNIQUEKMERS logic to prepare_genome enhancement
#416 opened Oct 1, 2024 by JoseEspinosa 2.2
Get rid of checksamplesheet.py and switch to nf-schema enhancement
#403 opened Jul 19, 2024 by JoseEspinosa 2.2
Add --only_step options enhancement
#337 opened Mar 8, 2023 by IStevant 2.2
Spike ins normalization enhancement
#321 opened Oct 28, 2022 by EmanuelSoda 2.2
12
Implementation of Nucleosome and Protein Occupancy analysis feature-request Request to add new functionality help wanted Extra attention is needed
#289 opened Jul 27, 2022 by snardeli 2.2
Find test dataset where PRESEQ doesn't fail enhancement
#276 opened May 9, 2022 by drpatelh 2.2
@JoseEspinosa
1
Output bigwigs with macs2 p-value signal for every base-pair feature-request Request to add new functionality
#251 opened Feb 3, 2022 by Al-Murphy 2.2
4
Merged biological replicates
#213 opened May 3, 2021 by ryanmboileau 2.2
Add IDR analysis feature-request Request to add new functionality
#87 opened May 30, 2019 by drpatelh 2.2
5
ProTip! Add no:assignee to see everything that’s not assigned.