Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

update PSMN configuration to keep up with cluster changes #788

Open
wants to merge 9 commits into
base: master
Choose a base branch
from
Open

update PSMN configuration to keep up with cluster changes #788

Changes from all commits
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
4114403
psmn.config : delete Lake-Flix
helenepolveche Oct 31, 2024
9dc115c
Merge pull request #2 from helenepolveche/patch-1
l-modolo Nov 5, 2024
cdcfc1d
psmn.config: update slurm partition information
l-modolo Nov 5, 2024
5509eca
Merge branch 'master' of github.com:nf-core/configs
l-modolo Nov 5, 2024
fddf257
psmn.config: update number of space for linter
l-modolo Nov 5, 2024
bdfc3e0
psmn.config: add back resourceLimits
l-modolo Nov 6, 2024
df37bd9
psmn.config: change clusterOption --parition to queue
l-modolo Nov 6, 2024
52d57ab
Merge branch 'master' into master
l-modolo Nov 12, 2024
13278be
Merge branch 'master' into master
jfy133 Nov 13, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
52 changes: 26 additions & 26 deletions conf/psmn.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -18,47 +18,47 @@ process {
cpus: 32,
time: 96.h
]
executor = 'slurm'
clusterOptions = "--partition=E5,Lake,Lake-flix"
executor = 'slurm'
queue = "E5,Lake"

cpus = 1
memory = 32.GB
time = 24.h
cpus = 1
memory = 32.GB
time = 24.h

withLabel: 'process_single|process_single_thread|sc_tiny|sc_small|sc_medium' {
clusterOptions = "--partition=E5,Lake,Lake-flix"
cpus = 1
memory = 114.GB
time = 24.h
queue = "Lake"
cpus = 1
memory = 96.GB
time = 24.h
}
withLabel: 'process_low|mc_small|process_very_low' {
clusterOptions = "--partition=E5,Lake,Lake-flix"
cpus = 16
memory = 90.GB
time = 24.h
queue = "Lake"
cpus = 16
memory = 80.GB
time = 24.h
}
withLabel: 'process_medium|mc_medium' {
clusterOptions = "--partition=Lake,Lake-flix"
cpus = 32
memory = 180.GB
time = 48.h
queue = "Lake"
cpus = 32
memory = 180.GB
time = 48.h
}
withLabel: 'process_high|mc_large|mc_huge|process_high_cpus|cpus_max' {
clusterOptions = "--partition=Lake,Lake-flix"
cpus = 32
memory = 370.GB
time = 48.h
queue = "Lake"
cpus = 32
memory = 370.GB
time = 48.h
}
withLabel: 'process_long|process_maximum_time|process_long_parallelized' {
clusterOptions = "--partition=Lake"
time = 96.h
queue = "Lake"
time = 96.h
}
withLabel: 'process_high_memory|memory_max' {
clusterOptions = "--partition=Lake,Lake-flix"
memory = 370.GB
queue = "Epyc"
memory = 500.GB
}
withLabel: gpu {
clusterOptions = "--partition=E5-GPU"
queue = "E5-GPU"
}
}

Expand Down
Loading