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[2.4.6] - Wangen (Patch) - 2022-11-14
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@TCLamnidis TCLamnidis released this 17 Nov 10:00
· 68 commits to master since this release
2.4.6
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Learn about vigilant mode.

Added

  • #933 Added support for customising --seq-length in mapDamage rescaling (♥ to @ashildv for requesting)

Fixed

  • Changed endors.py license from GPL to MIT (♥ to @aidaanva for fixing)
  • Removed erroneous R2 in single-end example in input TSV of usage docs (♥ to @aidaanva for fixing)
  • #928 Fixed read group incompatibility by re-adding picard AddOrReplaceReadGroups for MultiVCFAnalyzer (♥ to @aidaanva, @meganemichel for reporting)
  • Fixed edge case of DamageProfiler occasionally requiring FASTA index (♥ to @asmaa-a-abdelwahab for reporting)
  • #834 Increased significance values in general stats table for Qualimap mean/median coverages (♥ to @neija2611 for reporting)
  • Fixed parameter documentation for --snpcapture_bed regarding on-target SNP stats to state these stats currently not displayed in MultiQC only in the Qualimap results (♥ to @meganemichel and @TCLamnidis for reporting)
  • #934 Fixed broken parameter setting in mapDamage2 rescale length (♥ to @ashildv for reporting)

Dependencies

  • Updated MultiQC to official 1.13 version (rather than alpha)
  • Added pinned MALT dependency to ensure working version in future versions of eager

Deprecated

Contributors

asmaa-a-abdelwahab, TCLamnidis, and 4 other contributors
Assets 2
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