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update changelog
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rannick committed Feb 5, 2024
1 parent 6f7d915 commit 066993e
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -14,6 +14,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Fixed

- fix VCF_COLLECT handling when a tool is absent from FUSIONREPORT report
- fix bug when using parameter "whitelist" [#466](https://github.com/nf-core/rnafusion/pull/466)

### Removed

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4 changes: 0 additions & 4 deletions subworkflows/local/fusioninspector_workflow.nf
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Expand Up @@ -37,14 +37,10 @@ workflow FUSIONINSPECTOR_WORKFLOW {

CAT_CAT(ch_whitelist) // fusioninspector takes care of possible duplicates
ch_versions = ch_versions.mix(CAT_CAT.out.versions)

ch_reads_fusion = reads.join(CAT_CAT.out.file_out )
ch_reads_fusion.dump(tag:'with_cat')
}
else {
ch_reads_fusion = reads.join(ch_fusion_list.fusions )
ch_reads_fusion.dump(tag:'without_cat')

}

FUSIONINSPECTOR( ch_reads_fusion, index)
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