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Important! Template update for nf-core/tools v3.0.2 #1343

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Important! Template update for nf-core/tools v3.0.2

Important! Template update for nf-core/tools v3.0.2 #1343

Triggered via pull request October 17, 2024 09:55
@maxulyssemaxulysse
synchronize #444
nf-core-template-merge-3.0.2
Status Cancelled
Total duration 11m 57s
Artifacts –

ci.yml

on: pull_request
Matrix: test
Matrix: test_nanopore
Matrix: test_parameters
Matrix: test_sispa
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77 errors
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
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Test parameters (24.04.2 | --spades_mode metaviral | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --spades_mode metaviral | docker)
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Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
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Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
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Test parameters (latest-everything | --spades_mode corona | docker)
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Test parameters (latest-everything | --spades_mode corona | docker)
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Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
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Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The operation was canceled.
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
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Test SISPA (24.04.2 | --gff false | docker)
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Test SISPA (24.04.2 | --gff false | docker)
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Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | docker)
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Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | docker)
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Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
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Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
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Test parameters (24.04.2 | --spades_mode corona | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --spades_mode corona | docker)
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Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | docker)
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Test parameters (24.04.2 | --skip_assembly | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --skip_assembly | docker)
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Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
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Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
The operation was canceled.
Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | docker)
The operation was canceled.
Test SISPA (latest-everything | --genome 'NC_045512.2' | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test SISPA (latest-everything | --genome 'NC_045512.2' | docker)
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Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | docker)
The operation was canceled.
Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | docker)
The operation was canceled.
Test SISPA (24.04.2 | --genome 'NC_045512.2' | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test SISPA (24.04.2 | --genome 'NC_045512.2' | docker)
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Test parameters (latest-everything | --consensus_caller ivar | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --consensus_caller ivar | docker)
The operation was canceled.
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
The operation was canceled.
Test SISPA (latest-everything | --gff false | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test SISPA (latest-everything | --gff false | docker)
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Run pipeline with test data (24.04.2 | test | docker)
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Run pipeline with test data (24.04.2 | test | docker)
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Test parameters (latest-everything | --skip_assembly | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --skip_assembly | docker)
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Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
The operation was canceled.
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
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Test parameters (24.04.2 | --skip_kraken2 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --skip_kraken2 | docker)
The operation was canceled.
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
The operation was canceled.
Test parameters (latest-everything | --spades_mode metaviral | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --spades_mode metaviral | docker)
The operation was canceled.
Test parameters (24.04.2 | --consensus_caller ivar | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (24.04.2 | --consensus_caller ivar | docker)
The operation was canceled.
Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
The operation was canceled.
Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
The operation was canceled.
Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
The operation was canceled.
Test parameters (latest-everything | --skip_kraken2 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Test parameters (latest-everything | --skip_kraken2 | docker)
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Test parameters (24.04.2 | --skip_variants | docker)
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Test parameters (24.04.2 | --skip_variants | docker)
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Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-444' exists
Run pipeline with test data (latest-everything | test | docker)
The operation was canceled.