Changed Cutadapt to use nf-core modules #1329
svaronaci.yml
on: pull_request
Matrix: Test workflow parameters
Matrix: Run pipeline with test data
Matrix: Test Nanopore workflow
Matrix: Test SISPA workflow
Annotations
31 errors
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Test workflow parameters (--consensus_caller ivar)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Run pipeline with test data (latest-everything)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test workflow parameters (--skip_kraken2)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test workflow parameters (--skip_cutadapt --skip_snpeff)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Run pipeline with test data (23.04.0)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test workflow parameters (--additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test workflow parameters (--variant_caller bcftools --consensus_caller ivar)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test workflow parameters (--skip_plasmidid false --skip_asciigenome)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test workflow parameters (--skip_fastp --skip_pangolin)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--min_barcode_reads 10000)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--min_barcode_reads 10000)
The operation was canceled.
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Test SISPA workflow (--genome 'NC_045512.2')
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test SISPA workflow (--genome 'NC_045512.2')
The operation was canceled.
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Test Nanopore workflow (--additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --fr...
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --fr...
The operation was canceled.
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Test Nanopore workflow (--gff false --freyja_depthcutoff 1)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--gff false --freyja_depthcutoff 1)
The operation was canceled.
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Test SISPA workflow (--gff false)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test SISPA workflow (--gff false)
The operation was canceled.
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Test workflow parameters (--spades_mode corona)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test workflow parameters (--skip_assembly)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
The operation was canceled.
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Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--artic_minion_caller medaka --sequencing_summary false --fast5_dir false...
The operation was canceled.
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Test workflow parameters (--spades_mode metaviral)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--min_guppyplex_reads 10000)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--min_guppyplex_reads 10000)
The operation was canceled.
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Test workflow parameters (--skip_variants)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--input false --freyja_depthcutoff 1)
Canceling since a higher priority waiting request for 'nf-core CI-435' exists
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Test Nanopore workflow (--input false --freyja_depthcutoff 1)
The operation was canceled.
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