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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect ARCitect Public

    Cross-platform app to create and manage ARCs.

    Vue 9 6

  2. DataHUB DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 2 3

  3. ARC-specification ARC-specification Public

    12 13

  4. Swate Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 32 6

  5. ARCtrl ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 17 8

  6. dataplan dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    JavaScript 4 9

Repositories

Showing 10 of 84 repositories
  • ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    nfdi4plants/ARCtrl’s past year of commit activity
    F# 17 MIT 8 37 (1 issue needs help) 3 Updated Nov 29, 2024
  • dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    nfdi4plants/dataplan’s past year of commit activity
    JavaScript 4 GPL-3.0 9 21 0 Updated Nov 29, 2024
  • archigator-backend Public

    Archigator, a publicaton tool from Gitlab to Invenio

    nfdi4plants/archigator-backend’s past year of commit activity
    Python 1 AGPL-3.0 0 2 0 Updated Nov 29, 2024
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    nfdi4plants/Swate’s past year of commit activity
    F# 32 MIT 6 20 1 Updated Nov 29, 2024
  • nfdi4plants.github.io Public

    DataPLANT static website using Fornax

    nfdi4plants/nfdi4plants.github.io’s past year of commit activity
    Astro 4 MIT 14 1 0 Updated Nov 29, 2024
  • BOAT-Builder-for-Ontology-ARC-Templates Public

    This tool/website is for a user friendly creating of an ARC template (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.

    nfdi4plants/BOAT-Builder-for-Ontology-ARC-Templates’s past year of commit activity
    F# 2 0 7 0 Updated Nov 28, 2024
  • arcmanager_frontend Public

    Web-based application for creating and managing your ARCs directly on the DataHUB.

    nfdi4plants/arcmanager_frontend’s past year of commit activity
    Vue 0 AGPL-3.0 0 1 0 Updated Nov 28, 2024
  • arcmanager_backend Public

    FastAPI backend for the ARCmanager.

    nfdi4plants/arcmanager_backend’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Nov 28, 2024
  • arc-validation-packages Public

    ARC validation packages for https://avpr.nfdi4plants.org maintained by DataPLANT

    nfdi4plants/arc-validation-packages’s past year of commit activity
    F# 1 MIT 0 2 1 Updated Nov 26, 2024
  • elab2arc Public

    A prototype to convert eLabFTW experiments to ARC assays

    nfdi4plants/elab2arc’s past year of commit activity
    HTML 0 2 6 0 Updated Nov 26, 2024