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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect ARCitect Public

    Cross-platform app to create and manage ARCs.

    Vue 9 7

  2. DataHUB DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 3 3

  3. ARC-specification ARC-specification Public

    14 13

  4. Swate Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 35 7

  5. ARCtrl ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 17 8

  6. dataplan dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    JavaScript 7 10

Repositories

Showing 10 of 85 repositories
  • ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    nfdi4plants/ARCtrl’s past year of commit activity
    F# 17 MIT 8 42 (1 issue needs help) 3 Updated Feb 25, 2025
  • nfdi4plants/isa-ro-crate-profile’s past year of commit activity
    4 MIT 0 11 2 Updated Feb 25, 2025
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    nfdi4plants/Swate’s past year of commit activity
    F# 35 MIT 7 19 2 Updated Feb 25, 2025
  • nfdi4plants_ontology Public

    An intermediate ontology for plants used by DataPLANT to fill the ontology gap

    nfdi4plants/nfdi4plants_ontology’s past year of commit activity
    F# 7 MIT 10 3 0 Updated Feb 25, 2025
  • nfdi4plants.github.io Public

    DataPLANT static website using Fornax

    nfdi4plants/nfdi4plants.github.io’s past year of commit activity
    Astro 4 MIT 16 2 1 Updated Feb 25, 2025
  • nfdi4plants/ARC-specification’s past year of commit activity
    14 13 19 1 Updated Feb 25, 2025
  • ARCitect Public

    Cross-platform app to create and manage ARCs.

    nfdi4plants/ARCitect’s past year of commit activity
    Vue 9 7 32 1 Updated Feb 25, 2025
  • arc-to-invenio Public

    Automatic building of a Docker container for converting ARCs to Invenio Metadata

    nfdi4plants/arc-to-invenio’s past year of commit activity
    F# 2 MIT 0 9 2 Updated Feb 24, 2025
  • arc-validate Public

    Home of all the tools and libraries to create and run validation of ARCs

    nfdi4plants/arc-validate’s past year of commit activity
    F# 4 MIT 2 17 9 Updated Feb 24, 2025
  • arc-export Public

    Automatic building of a Docker container for exporting ARCs to the ARC.json

    nfdi4plants/arc-export’s past year of commit activity
    F# 3 MIT 0 1 4 Updated Feb 24, 2025