This program takes in an aligned multi-FASTA file and annotates the number of calls at each position in the genome. It then categorises these into 'Nt', 'Gaps', 'Mixed', and 'Ambiguous'. It calculates the percentage of samples with a given group call each position and generates a summary area plot for those categories. A dataframe is saved as a csv.
-
Notifications
You must be signed in to change notification settings - Fork 0
nfellaby/multifasta_aligned_genome_calls
About
Annotates the number of unique calls at each position in the genome for a multi-fasta aligned file.
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published