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eliminate arm64 versioning
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AstraBert authored Nov 22, 2024
1 parent e56cbc8 commit 6c1182d
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions shell/setup.sh
Original file line number Diff line number Diff line change
Expand Up @@ -95,7 +95,7 @@ mamba install \
-y \
-c conda-forge \
-c bioconda \
matplotlib biopython=1.84 edlib=1.2.3 cairosvg=2.3.0 pymsaviz ete3 beautifulsoup4 scipy scikit-learn >>${BASEDIR}/envs/logs/setup.log 2>&1
matplotlib biopython edlib cairosvg pymsaviz ete3 beautifulsoup4 scipy scikit-learn >>${BASEDIR}/envs/logs/setup.log 2>&1

${BASEDIR}/envs/python_dependencies/bin/pip3 install --no-cache-dir numpy pandas >>${BASEDIR}/envs/logs/setup.log 2>&1
echo "Python dependencies installation done"
Expand Down Expand Up @@ -240,7 +240,7 @@ mamba install \
bioconductor-ggtree \
r-tidyverse \
bioconductor-treeio \
r-phytools=0.6_60 \
r-phytools \
r-ape \
r-treedist \
r-reshape2 \
Expand All @@ -251,4 +251,4 @@ mamba install \

conda deactivate

echo "R installation done"
echo "R installation done"

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