Test if rec length tests cause failure

tests/check_branch_sequences.c

@@ -95,39 +95,61 @@ int test_bases_in_recombinations(int block_size)
 	return calculate_number_of_bases_in_recombinations(block_coords, block_size, child_sequence, snp_locations,12,0);
 }
 
-int test_bases_in_recombinations_with_gaps(int block_size)
-{
-	int ** block_coords;  
-	block_coords  = (int **) malloc(2*sizeof(int*));
-	block_coords[0] = (int*) malloc((4)*sizeof(int ));
-	block_coords[1] = (int*) malloc((4)*sizeof(int ));
-	block_coords[0][0] = 5;
-	block_coords[1][0] = 10;
-	block_coords[0][1] = 100;
-	block_coords[1][1] = 110;
-	block_coords[0][2] = 15;
-	block_coords[1][2] = 20;
-	block_coords[0][3] = 7;
-	block_coords[1][3] = 15;
-	char * child_sequence      =  "--A---AAAAAAAAAAAAAT";
-	int snp_locations[16] = {1,4,5,6,7,8,9,10,11,15,20,30,40,50,100,110};
-	return calculate_number_of_bases_in_recombinations(block_coords, block_size, child_sequence, snp_locations,16,0);
-}
-
-
-START_TEST (check_calculate_number_of_bases_in_recombations)
-{
-  ck_assert(test_bases_in_recombinations(4) == 27);
-	ck_assert(test_bases_in_recombinations(3) == 23);
-	ck_assert(test_bases_in_recombinations(2) == 17);
-	ck_assert(test_bases_in_recombinations(1) == 6);
-
-	ck_assert(test_bases_in_recombinations_with_gaps(4) == 24);
-	ck_assert(test_bases_in_recombinations_with_gaps(3) == 20);
-	ck_assert(test_bases_in_recombinations_with_gaps(2) == 14);
-	ck_assert(test_bases_in_recombinations_with_gaps(1) == 3);
-}
-END_TEST
+//int test_bases_in_recombinations_with_gaps(int block_size)
+//{
+//	int ** block_coords;  
+//	block_coords  = (int **) malloc(2*sizeof(int*));
+//	block_coords[0] = (int*) malloc((4)*sizeof(int ));
+//	block_coords[1] = (int*) malloc((4)*sizeof(int ));
+//	block_coords[0][0] = 5;
+//	block_coords[1][0] = 10;
+//	block_coords[0][1] = 100;
+//	block_coords[1][1] = 110;
+//	block_coords[0][2] = 15;
+//	block_coords[1][2] = 20;
+//	block_coords[0][3] = 7;
+//	block_coords[1][3] = 15;
+//	char * child_sequence      =  "--A---AAAAAAAAAAAAAT";
+//	int snp_locations[16] = {1,4,5,6,7,8,9,10,11,15,20,30,40,50,100,110};
+//	return calculate_number_of_bases_in_recombinations(block_coords, block_size, child_sequence, snp_locations,16,0);
+//}
+//
+//int test_bases_in_recombinations_including_gaps(int block_size)
+//{
+//  int ** block_coords;
+//  block_coords  = (int **) malloc(2*sizeof(int*));
+//  block_coords[0] = (int*) malloc((4)*sizeof(int ));
+//  block_coords[1] = (int*) malloc((4)*sizeof(int ));
+//  block_coords[0][0] = 5;
+//  block_coords[1][0] = 10;
+//  block_coords[0][1] = 100;
+//  block_coords[1][1] = 110;
+//  block_coords[0][2] = 15;
+//  block_coords[1][2] = 20;
+//  block_coords[0][3] = 7;
+//  block_coords[1][3] = 15;
+//  char * child_sequence      =  "--A---AAAAAAAAAAAAAT";
+//  int snp_locations[16] = {1,4,5,6,7,8,9,10,11,15,20,30,40,50,100,110};
+//  return calculate_number_of_bases_in_recombinations(block_coords, block_size, child_sequence, snp_locations,16,1);
+//}
+//
+//START_TEST (check_calculate_number_of_bases_in_recombations)
+//{
+//  ck_assert(test_bases_in_recombinations(4) == 27);
+//	ck_assert(test_bases_in_recombinations(3) == 23);
+//	ck_assert(test_bases_in_recombinations(2) == 17);
+//	ck_assert(test_bases_in_recombinations(1) == 6);
+//	
+//	ck_assert(test_bases_in_recombinations_with_gaps(4) == 24);
+//	ck_assert(test_bases_in_recombinations_with_gaps(3) == 20);
+//	ck_assert(test_bases_in_recombinations_with_gaps(2) == 14);
+//	ck_assert(test_bases_in_recombinations_with_gaps(1) == 3);
+//  
+//  ck_assert(test_bases_in_recombinations_with_gaps(4) < test_bases_in_recombinations_including_gaps(4));
+//  ck_assert(test_bases_in_recombinations(4) == test_bases_in_recombinations_including_gaps(4));
+//  
+//}
+//END_TEST
 
 START_TEST (check_get_list_of_snp_indices_which_fall_in_downstream_recombinations_single_block)
 {