Core genome COGs for S. pneumoniae. Version 1.0.0 of the scheme is from Corander et al 2017 Nat. Ecol. Evol. 1:1950-60. Future versions may include additional alleles.
The scheme has been formatted similar to Ridom so that releases should be compatible with existing software.
Each .fasta file in loci/ represents a gene (e.g. CLS00147.fasta contains known alleles of CLS00147). Each allele is numbered sequentially.