Merge pull request #7 from niklasmueboe/dev

fix format

docs/src/examples/ExampleAnalysis.jl

@@ -187,4 +187,4 @@ highly variable genes that can be used for analysis. We again here demonstrate i
 `Muon.AnnData`.
 =#
 
-adata = readstereoseqbinned(AnnData, stereoseq_file, 50)
+adata = readstereoseqbinned(AnnData, stereoseq_file, 50)

src/GridCount.jl

@@ -160,4 +160,4 @@ function totalrna(counts)
     return sparse((reduce(vcat, i) for i in (x, y, v))..., gridsize(counts)...)
 end
 
-end # module GridCount
+end # module GridCount

src/IO.jl

@@ -70,4 +70,4 @@ function readstereoseqbinned(file, binsize::Integer)
     )
 end
 
-end # module IO
+end # module IO

src/KDE.jl

@@ -231,4 +231,4 @@ function assigncelltype(counts, signatures, kernel; celltypes=nothing, log=false
     return celltypemap, cosine
 end
 
-end # module KDE
+end # module KDE

src/LocalMax.jl

@@ -85,4 +85,4 @@ function getlocalmaxima(counts, localmax, kernel; genes=nothing)
     )
 end
 
-end # module LocalMax
+end # module LocalMax

src/Utils.jl

@@ -12,4 +12,4 @@ end
 stringcoordinates(x, y) = @. string(x) * "_" * string(y)
 stringcoordinates(x...) = [join((string(j) for j in i), "_") for i in zip(x...)]
 
-end # module Utils
+end # module Utils

test/kde.jl

@@ -58,4 +58,4 @@ end
     coords = map(CartesianIndex, [(1, 1), (2, 3), (2, 4)])
 
     Sainsc.LocalMax.getkdeforcoordinates(counts, coords, kernel) == kdeatcoord
-end
+end

test/utils.jl

@@ -13,4 +13,4 @@ end
     x, y = Int[0, 0, 1, 0, 1], Int[0, 1, 0, 0, 1]
     @test Sainsc.Utils.categoricalcoordinates(x, y) ==
         ([1, 2, 3, 1, 4], ([0, 0, 1, 1], [0, 1, 0, 1]))
-end
+end