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niklasmueboe committed Aug 5, 2024
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`Sainsc.jl` - Segmentation-free analysis of in situ capture data[^1] - is,
as the name states, a tool to analyse in situ capture-based spatial
transcriptomics data. Actually, it can also be used to analyse imaging-based datasets.
For a more thorough background please refer to the
[original publication](https://TODO)
For a more thorough background please refer to the original publication.
or just follow along the provided examplary analysis.

A more _batteries included_[^2] version of this package is available in Python/Rust.
If you are interested have a look at [https://github.com/HiDiHlabs/sainsc](https://github.com/HiDiHlabs/sainsc).

## Citation

If you use `Sainsc.jl` for your research please consider citing
TODO
If you are using `Sainsc.jl` for your research please consider citing

Müller-Bötticher, N., Tiesmeyer, S., Eils, R., and Ishaque, N.
"Sainsc: a computational tool for segmentation-free analysis of in-situ capture"
bioRxiv (2024) [https://doi.org/10.1101/2024.08.02.603879](https://doi.org/10.1101/2024.08.02.603879)

## Installation

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